Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC016397.1-201ENST00000412463 242 ntBASIC6.06□□□□□ -1.44
COL4A4P53420 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.06□□□□□ -1.44
COL4A4P53420 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.06□□□□□ -1.44
COL4A4P53420 BX679664.2-201ENST00000439282 283 ntBASIC6.06□□□□□ -1.44
COL4A4P53420 CEACAMP7-201ENST00000444105 496 ntBASIC6.06□□□□□ -1.44
COL4A4P53420 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC6.06□□□□□ -1.44
COL4A4P53420 RN7SKP248-201ENST00000516278 305 ntBASIC6.06□□□□□ -1.44
COL4A4P53420 MIR4311-201ENST00000580794 100 ntBASIC6.06□□□□□ -1.44
COL4A4P53420 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC6.06□□□□□ -1.44
COL4A4P53420 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC6.06□□□□□ -1.44
COL4A4P53420 FAM25E-202ENST00000608562 189 ntBASIC6.06□□□□□ -1.44
COL4A4P53420 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC6.06□□□□□ -1.44
COL4A4P53420 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.06□□□□□ -1.44
COL4A4P53420 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.06□□□□□ -1.44
COL4A4P53420 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC6.06□□□□□ -1.44
COL4A4P53420 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
COL4A4P53420 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC6.05□□□□□ -1.44
COL4A4P53420 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
COL4A4P53420 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL4A4P53420 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC6.05□□□□□ -1.44
COL4A4P53420 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.05□□□□□ -1.44
COL4A4P53420 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.05□□□□□ -1.44
COL4A4P53420 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL4A4P53420 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL4A4P53420 RNA5SP319-201ENST00000362768 119 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 DUTP5-201ENST00000406790 469 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 MTND4LP17-201ENST00000414607 293 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC6.05□□□□□ -1.44
COL4A4P53420 AL360081.1-201ENST00000428299 555 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 LDHBP2-201ENST00000456969 1005 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 EIF1P7-201ENST00000487533 337 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 AC139697.1-201ENST00000548429 745 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 AC009163.6-201ENST00000612367 342 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 AC132068.1-201ENST00000623805 459 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
COL4A4P53420 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL4A4P53420 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.05□□□□□ -1.44
COL4A4P53420 AC093829.1-201ENST00000506662 1618 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL4A4P53420 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.05□□□□□ -1.44
COL4A4P53420 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.05□□□□□ -1.44
COL4A4P53420 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL4A4P53420 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC6.05□□□□□ -1.44
COL4A4P53420 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL4A4P53420 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL4A4P53420 AL034549.2-201ENST00000618285 3373 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL4A4P53420 AC026951.1-201ENST00000559530 2459 ntBASIC6.05□□□□□ -1.44
COL4A4P53420 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.05□□□□□ -1.44
COL4A4P53420 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.05□□□□□ -1.44
COL4A4P53420 HSPA8P18-201ENST00000439846 1928 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
COL4A4P53420 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC6.04□□□□□ -1.44
COL4A4P53420 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.04□□□□□ -1.44
COL4A4P53420 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC6.04□□□□□ -1.44
COL4A4P53420 RPS3AP41-201ENST00000462701 778 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 RPL7P6-201ENST00000480903 738 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 AC007686.1-201ENST00000488511 463 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 RPS17P5-201ENST00000498293 408 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 AC090638.1-201ENST00000498296 909 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC6.04□□□□□ -1.44
COL4A4P53420 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC6.04□□□□□ -1.44
COL4A4P53420 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC6.04□□□□□ -1.44
COL4A4P53420 AF230666.2-201ENST00000602328 725 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 CYP4F35P-202ENST00000636121 390 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 MFSD8-216ENST00000641147 4009 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 AC016745.2-201ENST00000608834 3443 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 HNRNPA1P54-201ENST00000411857 9714 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL4A4P53420 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 AC013442.1-201ENST00000397347 228 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL4A4P53420 RPL23AP18-201ENST00000416139 468 ntBASIC6.04□□□□□ -1.44
COL4A4P53420 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC6.04□□□□□ -1.44
COL4A4P53420 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC6.04□□□□□ -1.44
COL4A4P53420 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms