Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL133388.1-201ENST00000404509 287 ntBASIC9.35□□□□□ -0.91
CUX1P39880 AL139128.1-201ENST00000413921 941 ntBASIC9.35□□□□□ -0.91
CUX1P39880 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC9.35□□□□□ -0.91
CUX1P39880 RPS3AP41-201ENST00000462701 778 ntBASIC9.35□□□□□ -0.91
CUX1P39880 TRBV5-2-201ENST00000489095 273 ntBASIC9.35□□□□□ -0.91
CUX1P39880 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC9.35□□□□□ -0.91
CUX1P39880 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
CUX1P39880 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC9.35□□□□□ -0.91
CUX1P39880 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC9.35□□□□□ -0.91
CUX1P39880 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC9.35□□□□□ -0.91
CUX1P39880 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC9.35□□□□□ -0.91
CUX1P39880 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC9.35□□□□□ -0.91
CUX1P39880 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
CUX1P39880 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
CUX1P39880 AL008638.3-201ENST00000623027 5182 ntBASIC9.34□□□□□ -0.91
CUX1P39880 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
CUX1P39880 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX1P39880 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
CUX1P39880 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
CUX1P39880 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
CUX1P39880 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
CUX1P39880 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
CUX1P39880 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX1P39880 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
CUX1P39880 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
CUX1P39880 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC9.34□□□□□ -0.91
CUX1P39880 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC9.34□□□□□ -0.91
CUX1P39880 AL360081.1-201ENST00000428299 555 ntBASIC9.34□□□□□ -0.91
CUX1P39880 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX1P39880 FABP5P2-201ENST00000439042 408 ntBASIC9.34□□□□□ -0.91
CUX1P39880 HMGB1P40-201ENST00000525121 540 ntBASIC9.34□□□□□ -0.91
CUX1P39880 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC9.34□□□□□ -0.91
CUX1P39880 AC007346.2-201ENST00000564816 892 ntBASIC9.34□□□□□ -0.91
CUX1P39880 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC9.34□□□□□ -0.91
CUX1P39880 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC9.34□□□□□ -0.91
CUX1P39880 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC9.34□□□□□ -0.91
CUX1P39880 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX1P39880 AC137695.1-201ENST00000604126 489 ntBASIC9.34□□□□□ -0.91
CUX1P39880 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX1P39880 TEX41-254ENST00000626394 423 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX1P39880 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
CUX1P39880 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX1P39880 AC114947.2-201ENST00000565748 2125 ntBASIC9.34□□□□□ -0.91
CUX1P39880 AC002090.1-201ENST00000625000 2138 ntBASIC9.34□□□□□ -0.91
CUX1P39880 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC9.34□□□□□ -0.91
CUX1P39880 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
CUX1P39880 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
CUX1P39880 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
CUX1P39880 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC9.33□□□□□ -0.92
CUX1P39880 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
CUX1P39880 AP004607.3-201ENST00000530354 3915 ntBASIC9.33□□□□□ -0.92
CUX1P39880 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
CUX1P39880 RNA5SP326-201ENST00000363209 110 ntBASIC9.33□□□□□ -0.92
CUX1P39880 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC9.33□□□□□ -0.92
CUX1P39880 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC9.33□□□□□ -0.92
CUX1P39880 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC9.33□□□□□ -0.92
CUX1P39880 CSNK1A1P3-201ENST00000504105 330 ntBASIC9.33□□□□□ -0.92
CUX1P39880 CR383656.6-201ENST00000550518 394 ntBASIC9.33□□□□□ -0.92
CUX1P39880 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC9.33□□□□□ -0.92
CUX1P39880 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC9.33□□□□□ -0.92
CUX1P39880 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC9.33□□□□□ -0.92
CUX1P39880 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC9.33□□□□□ -0.92
CUX1P39880 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
CUX1P39880 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC9.33□□□□□ -0.92
CUX1P39880 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC9.33□□□□□ -0.92
CUX1P39880 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
CUX1P39880 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC9.33□□□□□ -0.92
CUX1P39880 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
CUX1P39880 AC006511.3-201ENST00000624929 1783 ntBASIC9.33□□□□□ -0.92
CUX1P39880 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
CUX1P39880 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
CUX1P39880 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
CUX1P39880 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
CUX1P39880 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
CUX1P39880 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
CUX1P39880 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
CUX1P39880 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
CUX1P39880 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
CUX1P39880 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
CUX1P39880 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
CUX1P39880 GNAS-202ENST00000306090 477 ntTSL 5 BASIC9.32□□□□□ -0.92
CUX1P39880 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
CUX1P39880 CYB5AP4-201ENST00000396692 399 ntBASIC9.32□□□□□ -0.92
CUX1P39880 FAR2P2-201ENST00000413041 594 ntBASIC9.32□□□□□ -0.92
CUX1P39880 FAR2P4-202ENST00000425399 584 ntBASIC9.32□□□□□ -0.92
CUX1P39880 FAM96AP1-201ENST00000430879 482 ntBASIC9.32□□□□□ -0.92
CUX1P39880 HCG14-201ENST00000444986 413 ntTSL 2 BASIC9.32□□□□□ -0.92
CUX1P39880 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC9.32□□□□□ -0.92
CUX1P39880 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC9.32□□□□□ -0.92
CUX1P39880 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC9.32□□□□□ -0.92
CUX1P39880 AGGF1P7-201ENST00000562369 913 ntBASIC9.32□□□□□ -0.92
CUX1P39880 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC9.32□□□□□ -0.92
CUX1P39880 MIR4330-201ENST00000579077 105 ntBASIC9.32□□□□□ -0.92
CUX1P39880 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
CUX1P39880 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
CUX1P39880 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC9.32□□□□□ -0.92
CUX1P39880 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC9.32□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms