Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC129778.1-202ENST00000623812 261 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 AC097372.4-201ENST00000625025 466 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC6.97□□□□□ -1.29
SMARCA1P28370 AL591379.1-207ENST00000635982 261 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SMARCA1P28370 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SMARCA1P28370 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
SMARCA1P28370 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.97□□□□□ -1.29
SMARCA1P28370 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
SMARCA1P28370 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.97□□□□□ -1.29
SMARCA1P28370 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
SMARCA1P28370 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SMARCA1P28370 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
SMARCA1P28370 AC010329.1-201ENST00000593903 8328 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.96□□□□□ -1.29
SMARCA1P28370 PSG10P-201ENST00000501199 1500 ntBASIC6.96□□□□□ -1.29
SMARCA1P28370 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC6.96□□□□□ -1.29
SMARCA1P28370 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.29
SMARCA1P28370 ZNF101P1-201ENST00000435701 1720 ntBASIC6.96□□□□□ -1.29
SMARCA1P28370 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 RNU6-618P-201ENST00000363518 112 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
SMARCA1P28370 AL121835.1-201ENST00000404250 354 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.96□□□□□ -1.3
SMARCA1P28370 XIST-201ENST00000416330 750 ntTSL 2 BASIC6.96□□□□□ -1.3
SMARCA1P28370 BX284632.2-201ENST00000421091 399 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC6.96□□□□□ -1.3
SMARCA1P28370 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.96□□□□□ -1.3
SMARCA1P28370 AL731534.1-201ENST00000434711 269 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC6.96□□□□□ -1.3
SMARCA1P28370 MTND2P25-201ENST00000449028 610 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 AL162739.1-201ENST00000450606 307 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.96□□□□□ -1.3
SMARCA1P28370 CST12P-201ENST00000457644 362 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 RN7SL193P-201ENST00000491708 276 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC6.96□□□□□ -1.3
SMARCA1P28370 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC6.96□□□□□ -1.3
SMARCA1P28370 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 MTND1P6-201ENST00000523621 946 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC6.96□□□□□ -1.3
SMARCA1P28370 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC6.96□□□□□ -1.3
SMARCA1P28370 AP000648.1-201ENST00000529682 397 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC6.96□□□□□ -1.3
SMARCA1P28370 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC6.96□□□□□ -1.3
SMARCA1P28370 AL049779.3-201ENST00000557141 606 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.96□□□□□ -1.3
SMARCA1P28370 AC090826.1-203ENST00000569235 490 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC6.96□□□□□ -1.3
SMARCA1P28370 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.96□□□□□ -1.3
SMARCA1P28370 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC6.96□□□□□ -1.3
SMARCA1P28370 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6.96□□□□□ -1.3
SMARCA1P28370 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC6.96□□□□□ -1.3
SMARCA1P28370 AL031601.1-201ENST00000605702 394 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 AL136097.3-201ENST00000611097 505 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 AL355974.3-201ENST00000617383 467 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 AC119674.1-220ENST00000641502 1048 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.96□□□□□ -1.3
SMARCA1P28370 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.96□□□□□ -1.3
SMARCA1P28370 AC073365.1-203ENST00000641055 1992 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 OLMALINC-203ENST00000641087 3779 ntBASIC6.96□□□□□ -1.3
SMARCA1P28370 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC6.96□□□□□ -1.3
SMARCA1P28370 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SMARCA1P28370 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
SMARCA1P28370 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.95□□□□□ -1.3
SMARCA1P28370 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SMARCA1P28370 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SMARCA1P28370 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
SMARCA1P28370 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SMARCA1P28370 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.95□□□□□ -1.3
SMARCA1P28370 THAP12P9-201ENST00000503971 2360 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
SMARCA1P28370 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.95□□□□□ -1.3
SMARCA1P28370 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
SMARCA1P28370 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SMARCA1P28370 OR7E156P-201ENST00000400303 464 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 AC016739.1-201ENST00000405359 345 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC6.95□□□□□ -1.3
SMARCA1P28370 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.95□□□□□ -1.3
SMARCA1P28370 NMD3P2-201ENST00000421815 761 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 SETP9-201ENST00000423837 832 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.95□□□□□ -1.3
SMARCA1P28370 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC6.95□□□□□ -1.3
SMARCA1P28370 AL138899.2-201ENST00000439139 499 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 BMS1P10-201ENST00000443754 1120 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC6.95□□□□□ -1.3
SMARCA1P28370 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC6.95□□□□□ -1.3
SMARCA1P28370 EIF2S2P4-201ENST00000461070 984 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 AL355032.1-201ENST00000472981 438 ntBASIC6.95□□□□□ -1.3
SMARCA1P28370 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.95□□□□□ -1.3
SMARCA1P28370 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC6.95□□□□□ -1.3
SMARCA1P28370 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms