Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.91□□□□□ -1.46
HMGA1P17096 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC5.91□□□□□ -1.46
HMGA1P17096 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.91□□□□□ -1.46
HMGA1P17096 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HMGA1P17096 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
HMGA1P17096 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC5.91□□□□□ -1.46
HMGA1P17096 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
HMGA1P17096 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HMGA1P17096 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HMGA1P17096 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.46
HMGA1P17096 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HMGA1P17096 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.9□□□□□ -1.46
HMGA1P17096 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
HMGA1P17096 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HMGA1P17096 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HMGA1P17096 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.9□□□□□ -1.46
HMGA1P17096 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
HMGA1P17096 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HMGA1P17096 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.9□□□□□ -1.46
HMGA1P17096 RN7SKP28-201ENST00000364770 305 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.9□□□□□ -1.46
HMGA1P17096 RNU6-171P-201ENST00000384354 107 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 RPL23AP17-201ENST00000401064 499 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.9□□□□□ -1.46
HMGA1P17096 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.9□□□□□ -1.46
HMGA1P17096 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HMGA1P17096 CRIP1P1-201ENST00000427567 185 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 USP24P1-201ENST00000433802 779 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 LDHAP2-201ENST00000437325 985 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.9□□□□□ -1.46
HMGA1P17096 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.9□□□□□ -1.46
HMGA1P17096 RN7SL583P-201ENST00000475692 287 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 AC090638.1-201ENST00000498296 909 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.9□□□□□ -1.46
HMGA1P17096 snoU109.5-201ENST00000516231 132 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.9□□□□□ -1.46
HMGA1P17096 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.9□□□□□ -1.46
HMGA1P17096 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.9□□□□□ -1.46
HMGA1P17096 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.9□□□□□ -1.46
HMGA1P17096 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.9□□□□□ -1.46
HMGA1P17096 MIR1269B-201ENST00000580405 75 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.9□□□□□ -1.46
HMGA1P17096 AC013244.1-201ENST00000604279 193 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
HMGA1P17096 MIR6719-201ENST00000622428 87 ntBASIC5.9□□□□□ -1.46
HMGA1P17096 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.9□□□□□ -1.46
HMGA1P17096 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
HMGA1P17096 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HMGA1P17096 AC087516.1-201ENST00000561236 2428 ntBASIC5.9□□□□□ -1.47
HMGA1P17096 PWAR1-201ENST00000624188 2414 ntBASIC5.9□□□□□ -1.47
HMGA1P17096 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HMGA1P17096 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
HMGA1P17096 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.9□□□□□ -1.47
HMGA1P17096 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HMGA1P17096 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HMGA1P17096 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.9□□□□□ -1.47
HMGA1P17096 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HMGA1P17096 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGA1P17096 AP002991.2-201ENST00000623807 2801 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HMGA1P17096 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
HMGA1P17096 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
HMGA1P17096 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC5.89□□□□□ -1.47
HMGA1P17096 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGA1P17096 MAPK10-261ENST00000641050 3109 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
HMGA1P17096 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGA1P17096 GAPDHP24-201ENST00000328713 983 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.89□□□□□ -1.47
HMGA1P17096 RNA5SP319-201ENST00000362768 119 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.89□□□□□ -1.47
HMGA1P17096 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGA1P17096 AC009804.1-201ENST00000400949 179 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.89□□□□□ -1.47
HMGA1P17096 VN1R21P-201ENST00000426703 765 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.89□□□□□ -1.47
HMGA1P17096 RSU1P1-201ENST00000453416 441 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 RN7SL799P-201ENST00000475891 298 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.89□□□□□ -1.47
HMGA1P17096 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.89□□□□□ -1.47
HMGA1P17096 RNA5SP34-201ENST00000516887 130 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.89□□□□□ -1.47
HMGA1P17096 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.89□□□□□ -1.47
HMGA1P17096 MIR4311-201ENST00000580794 100 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 BX323046.1-201ENST00000610145 535 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 AC025574.2-201ENST00000615621 514 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 AC005840.5-201ENST00000619166 599 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 MAPK10-350ENST00000641777 965 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGA1P17096 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC5.89□□□□□ -1.47
HMGA1P17096 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.89□□□□□ -1.47
HMGA1P17096 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGA1P17096 AL731532.1-201ENST00000623972 4236 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HMGA1P17096 AC123769.1-201ENST00000530992 3192 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HMGA1P17096 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.89□□□□□ -1.47
HMGA1P17096 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.89□□□□□ -1.47
HMGA1P17096 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HMGA1P17096 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms