Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AC015977.1-201ENST00000418887 292 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AC007562.1-201ENST00000421819 517 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AC023274.2-201ENST00000445264 521 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 RPL15P21-201ENST00000495592 567 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 CYP4Z2P-201ENST00000423332 1512 ntBASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 AC008171.1-201ENST00000395058 200 ntBASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 BTG3P1-201ENST00000435859 716 ntBASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 RANP1-206ENST00000455094 651 ntBASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 CCDC11P1-201ENST00000503137 1162 ntBASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC11.05□□□□□ -0.64
SHROOM4Q9ULL8 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 MFSD8-219ENST00000641228 2559 ntBASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 AC005042.1-201ENST00000393397 800 ntBASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 AC007568.1-201ENST00000422912 471 ntBASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 PSMD10P3-201ENST00000437000 448 ntBASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 AC245047.2-201ENST00000441060 530 ntBASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 RPL32P33-201ENST00000487023 394 ntBASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 RNU6ATAC39P-201ENST00000516309 149 ntBASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 AC022034.1-201ENST00000512867 2156 ntBASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
SHROOM4Q9ULL8 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 AC005297.1-201ENST00000444765 862 ntBASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 PACRG-210ENST00000611387 279 ntTSL 5 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 AL139099.4-201ENST00000614802 114 ntBASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 AC136428.4-201ENST00000634254 1155 ntBASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 SRRM1P3-201ENST00000426911 2678 ntBASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
SHROOM4Q9ULL8 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
SHROOM4Q9ULL8 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
SHROOM4Q9ULL8 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
SHROOM4Q9ULL8 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
SHROOM4Q9ULL8 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
SHROOM4Q9ULL8 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 MIR765-201ENST00000390226 114 ntBASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 HIST1H3PS1-201ENST00000404612 417 ntBASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 TMA16P2-201ENST00000413187 601 ntBASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 CYCSP12-201ENST00000437729 300 ntBASIC11.02□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms