Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC068138.1-201ENST00000412635 217 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC009480.2-201ENST00000422916 432 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 RPL7P57-201ENST00000423238 740 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 snoU13.1-201ENST00000459157 104 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC023424.1-201ENST00000496058 459 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 BTF3P13-201ENST00000513224 490 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 FOXG1-AS1-203ENST00000551395 602 ntTSL 4 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC006130.2-201ENST00000586202 326 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC000068.2-201ENST00000608816 460 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AL133243.4-201ENST00000623116 3109 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 MID1-212ENST00000616003 1926 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AL033543.1-201ENST00000623440 13454 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 STC1-201ENST00000290271 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AL049693.1-201ENST00000402760 611 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 PRUNEP1-201ENST00000425846 705 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 RN7SKP147-201ENST00000517154 244 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 MED28P5-201ENST00000528254 438 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 OR52H1-202ENST00000641796 1061 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 AC087516.1-201ENST00000561236 2428 ntBASIC5.39□□□□□ -1.55
CHD8Q9HCK8 CACNA1D-203ENST00000422281 6414 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC5.39□□□□□ -1.55
CHD8Q9HCK8 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 NVL-211ENST00000469075 2566 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 MFSD8-217ENST00000641178 4374 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 AP000542.3-201ENST00000623391 6114 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 SNORA16A-201ENST00000384342 137 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 AC008072.1-201ENST00000434254 824 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 RNA5SP143-201ENST00000516936 115 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 AC027807.1-201ENST00000559921 996 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 AC010857.1-201ENST00000606398 594 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 AL139099.4-201ENST00000614802 114 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 AC007485.2-201ENST00000623493 1667 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 AC009962.1-201ENST00000567327 3813 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 GIGYF2-201ENST00000373563 5847 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHD8Q9HCK8 SPATA31B1P-201ENST00000434692 4016 ntBASIC5.38□□□□□ -1.55
CHD8Q9HCK8 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms