Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AL355377.1-201ENST00000621125 1653 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AC096921.2-201ENST00000561507 1916 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AC012254.3-201ENST00000591183 2117 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 GAPDHP24-201ENST00000328713 983 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 BX323845.3-201ENST00000428215 527 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 PCBP2P1-201ENST00000437262 977 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 RN7SL269P-201ENST00000467795 305 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 CYCSP22-201ENST00000517555 339 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 CASP5-209ENST00000531367 879 ntTSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 GNG2-208ENST00000554875 430 ntTSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AP001496.3-201ENST00000580230 913 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AC137695.1-201ENST00000604126 489 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AC092944.2-201ENST00000605443 889 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AL021368.3-201ENST00000607119 578 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AC116667.2-201ENST00000641075 823 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 OR8G3P-202ENST00000641572 1255 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 NAMPTP1-201ENST00000440465 2514 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 MSL3P1-202ENST00000440028 1468 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 AC022034.1-201ENST00000512867 2156 ntBASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.07□□□□□ -1.44
HDDC3Q8N4P3 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AC011503.2-201ENST00000594230 1500 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 OR10R3P-201ENST00000361688 942 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 MIR937-201ENST00000401271 86 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 RPL35AP3-201ENST00000414680 288 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 RPS27AP3-201ENST00000453803 454 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AL122020.1-201ENST00000472287 459 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 PCNAP4-201ENST00000532690 730 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AC020916.2-201ENST00000591242 360 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AC011497.2-201ENST00000600255 639 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AC005229.3-201ENST00000603438 323 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 SUMO2P15-201ENST00000604285 278 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AL589674.2-201ENST00000604304 337 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AC024589.2-201ENST00000605642 1294 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AL136131.3-201ENST00000607600 188 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 U1.34-201ENST00000618578 162 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 AL691477.1-201ENST00000624398 162 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 CCT5-215ENST00000625723 135 ntTSL 5 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms