Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC022417.1-201ENST00000624768 1303 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 RNU6-618P-201ENST00000363518 112 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC087752.1-201ENST00000391360 558 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 RN7SKP286-201ENST00000410894 299 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC098592.2-201ENST00000413158 265 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AL929472.1-201ENST00000417484 429 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 RCC2P2-201ENST00000422174 918 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AL356806.1-201ENST00000422524 916 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AJ239321.1-201ENST00000424255 564 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 GAPDHP20-201ENST00000444107 1007 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 RPL31P15-201ENST00000449770 338 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 RN7SL254P-201ENST00000460609 284 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 RN7SL610P-201ENST00000463845 291 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 RN7SL860P-201ENST00000473738 223 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 SCG5-207ENST00000497208 949 ntTSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC010442.1-201ENST00000515583 816 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 PVT1-214ENST00000522875 922 ntTSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AL358913.1-201ENST00000554342 121 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 RPL29P33-201ENST00000587474 316 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC073575.2-201ENST00000614212 627 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AL122023.1-201ENST00000622847 530 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC006328.2-201ENST00000623198 397 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 AC012005.2-201ENST00000624333 397 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 PSMC1P6-201ENST00000477233 1319 ntBASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
PDLIM3Q53GG5 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.57
PDLIM3Q53GG5 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
PDLIM3Q53GG5 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
PDLIM3Q53GG5 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 RNA5SP321-201ENST00000362722 111 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 RNU1-59P-201ENST00000364829 162 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AL359694.1-201ENST00000403247 604 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC092017.2-201ENST00000427600 362 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 SNRPBP1-201ENST00000443634 282 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 RPL5P7-201ENST00000444235 813 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 MORF4L1P4-201ENST00000450245 976 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 IGKV1D-22-201ENST00000518953 324 ntBASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC5.21□□□□□ -1.58
PDLIM3Q53GG5 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms