Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 DPY19L1P1-201ENST00000417811 2594 ntBASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 AL451142.1-201ENST00000375867 775 ntBASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 AC072052.1-201ENST00000496556 306 ntBASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 ST13P12-201ENST00000508958 1094 ntBASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 AC137768.1-201ENST00000549998 553 ntBASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 CLMN-206ENST00000556441 452 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 GARSP1-201ENST00000570895 719 ntBASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 AC104785.1-201ENST00000603220 588 ntBASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 API5-210ENST00000534600 1760 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC7.05□□□□□ -1.28
CCDC88AQ3V6T2 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 RPL26P29-201ENST00000415623 438 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 RPL7P39-201ENST00000481157 744 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AL049779.3-201ENST00000557141 606 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC024589.2-201ENST00000605642 1294 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AL133406.3-201ENST00000606817 541 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AL022394.1-201ENST00000606979 292 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AL355974.3-201ENST00000617383 467 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AP002799.1-201ENST00000623552 423 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AL159987.1-201ENST00000347911 293 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AL035419.1-201ENST00000397037 564 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 RPS7P3-201ENST00000443360 580 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC139365.2-201ENST00000517972 253 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 MIR4697-201ENST00000582977 78 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC009163.6-201ENST00000612367 342 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AL359195.2-201ENST00000623657 4412 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AC123769.2-201ENST00000624332 5984 ntBASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC88AQ3V6T2 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 THAP12P9-201ENST00000503971 2360 ntBASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 AC130304.1-201ENST00000622942 2385 ntBASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 AC023141.8-201ENST00000442554 208 ntBASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 RNU1-88P-201ENST00000459274 128 ntBASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 AC083982.1-201ENST00000485679 344 ntBASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 CCDC11P1-201ENST00000503137 1162 ntBASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms