Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC090607.5-201ENST00000615692 224 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC7.01□□□□□ -1.29
COL5A3P25940 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
COL5A3P25940 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC7.01□□□□□ -1.29
COL5A3P25940 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC7.01□□□□□ -1.29
COL5A3P25940 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
COL5A3P25940 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL5A3P25940 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC7.01□□□□□ -1.29
COL5A3P25940 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC7.01□□□□□ -1.29
COL5A3P25940 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL5A3P25940 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC7.01□□□□□ -1.29
COL5A3P25940 AC005034.3-201ENST00000604845 1747 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC7.01□□□□□ -1.29
COL5A3P25940 ZNF365-204ENST00000395251 2695 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL5A3P25940 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC7.01□□□□□ -1.29
COL5A3P25940 AL133388.1-201ENST00000404509 287 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 AL807761.1-201ENST00000417622 171 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC7.01□□□□□ -1.29
COL5A3P25940 AC092324.1-201ENST00000468671 324 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 RPS7P6-201ENST00000485777 579 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 HMGB1P44-201ENST00000508597 572 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC7.01□□□□□ -1.29
COL5A3P25940 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL5A3P25940 WBP1LP8-201ENST00000617401 327 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL5A3P25940 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
COL5A3P25940 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL5A3P25940 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC7□□□□□ -1.29
COL5A3P25940 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
COL5A3P25940 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC7□□□□□ -1.29
COL5A3P25940 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC7□□□□□ -1.29
COL5A3P25940 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 AL121886.1-201ENST00000358609 435 ntBASIC7□□□□□ -1.29
COL5A3P25940 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC7□□□□□ -1.29
COL5A3P25940 RNA5SP487-201ENST00000410186 122 ntBASIC7□□□□□ -1.29
COL5A3P25940 RNA5SP251-201ENST00000410614 137 ntBASIC7□□□□□ -1.29
COL5A3P25940 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC7□□□□□ -1.29
COL5A3P25940 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC7□□□□□ -1.29
COL5A3P25940 AC083899.1-201ENST00000454465 3819 ntBASIC7□□□□□ -1.29
COL5A3P25940 AC105233.1-201ENST00000498840 781 ntBASIC7□□□□□ -1.29
COL5A3P25940 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC7□□□□□ -1.29
COL5A3P25940 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC7□□□□□ -1.29
COL5A3P25940 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC7□□□□□ -1.29
COL5A3P25940 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC7□□□□□ -1.29
COL5A3P25940 MIR4480-201ENST00000582492 71 ntBASIC7□□□□□ -1.29
COL5A3P25940 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC7□□□□□ -1.29
COL5A3P25940 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC7□□□□□ -1.29
COL5A3P25940 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
COL5A3P25940 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC7□□□□□ -1.29
COL5A3P25940 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC7□□□□□ -1.29
COL5A3P25940 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC7□□□□□ -1.29
COL5A3P25940 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
COL5A3P25940 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC6.99□□□□□ -1.29
COL5A3P25940 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL5A3P25940 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC6.99□□□□□ -1.29
COL5A3P25940 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC6.99□□□□□ -1.29
COL5A3P25940 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC6.99□□□□□ -1.29
COL5A3P25940 AC009831.5-201ENST00000624000 3189 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 RNU1-146P-201ENST00000364015 165 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 AL360271.1-201ENST00000395679 510 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 RN7SKP126-201ENST00000411143 300 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 HMGB1P32-201ENST00000425971 565 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 RHOT1P3-201ENST00000436571 331 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 NANOGP9-201ENST00000439890 892 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.99□□□□□ -1.29
COL5A3P25940 TOMM22P4-201ENST00000511318 336 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC6.99□□□□□ -1.29
COL5A3P25940 RN7SKP98-201ENST00000517070 156 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC6.99□□□□□ -1.29
COL5A3P25940 MAL2-208ENST00000523307 556 ntTSL 4 BASIC6.99□□□□□ -1.29
COL5A3P25940 MIR4330-201ENST00000579077 105 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC6.99□□□□□ -1.29
COL5A3P25940 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC6.99□□□□□ -1.29
COL5A3P25940 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
COL5A3P25940 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL5A3P25940 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL5A3P25940 OLMALINC-203ENST00000641087 3779 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 PANDAR-201ENST00000629595 1506 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL5A3P25940 KCNMB3P1-202ENST00000493696 3389 ntBASIC6.99□□□□□ -1.29
COL5A3P25940 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.99□□□□□ -1.29
COL5A3P25940 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL5A3P25940 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL5A3P25940 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL5A3P25940 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.99□□□□□ -1.29
COL5A3P25940 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 RN7SKP279-201ENST00000411383 298 ntBASIC6.98□□□□□ -1.29
COL5A3P25940 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC6.98□□□□□ -1.29
COL5A3P25940 GAPDHP25-201ENST00000447061 1001 ntBASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms