Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 FAM32BP-201ENST00000344033 333 ntBASIC6.86□□□□□ -1.31
BRCA1P38398 SNORA17.1-201ENST00000362945 126 ntBASIC6.86□□□□□ -1.31
BRCA1P38398 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC6.86□□□□□ -1.31
BRCA1P38398 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 AL356967.1-201ENST00000406305 431 ntBASIC6.86□□□□□ -1.31
BRCA1P38398 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC6.86□□□□□ -1.31
BRCA1P38398 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC6.86□□□□□ -1.31
BRCA1P38398 AL138878.2-201ENST00000440581 1241 ntBASIC6.86□□□□□ -1.31
BRCA1P38398 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC6.86□□□□□ -1.31
BRCA1P38398 CSNK1A1P3-201ENST00000504105 330 ntBASIC6.86□□□□□ -1.31
BRCA1P38398 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC6.86□□□□□ -1.31
BRCA1P38398 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 WBP1LP8-201ENST00000617401 327 ntBASIC6.86□□□□□ -1.31
BRCA1P38398 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
BRCA1P38398 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
BRCA1P38398 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC6.86□□□□□ -1.31
BRCA1P38398 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
BRCA1P38398 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
BRCA1P38398 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.85□□□□□ -1.31
BRCA1P38398 AC068138.1-201ENST00000412635 217 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 AC093162.1-201ENST00000419682 124 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 TPT1P13-201ENST00000449760 499 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC6.85□□□□□ -1.31
BRCA1P38398 AC074255.1-201ENST00000511259 501 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 CYP4F27P-201ENST00000514557 494 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC6.85□□□□□ -1.31
BRCA1P38398 AC095055.1-201ENST00000603472 1113 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 AL353662.3-201ENST00000625131 237 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC6.85□□□□□ -1.31
BRCA1P38398 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC6.85□□□□□ -1.31
BRCA1P38398 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 AC009831.5-201ENST00000624000 3189 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 AL356317.1-201ENST00000396110 1436 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 AP003119.3-201ENST00000566747 4192 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
BRCA1P38398 SNURFL-201ENST00000309296 343 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
BRCA1P38398 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 AL451136.1-201ENST00000435399 325 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC6.85□□□□□ -1.31
BRCA1P38398 RPS29P33-201ENST00000456717 146 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 RNU1-88P-201ENST00000459274 128 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.85□□□□□ -1.31
BRCA1P38398 RN7SKP99-201ENST00000517028 307 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.85□□□□□ -1.31
BRCA1P38398 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.85□□□□□ -1.31
BRCA1P38398 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.85□□□□□ -1.31
BRCA1P38398 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
BRCA1P38398 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.85□□□□□ -1.31
BRCA1P38398 INTS6P1-201ENST00000504674 2530 ntBASIC6.85□□□□□ -1.31
BRCA1P38398 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
BRCA1P38398 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.85□□□□□ -1.31
BRCA1P38398 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC6.85□□□□□ -1.31
BRCA1P38398 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
BRCA1P38398 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
BRCA1P38398 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6.84□□□□□ -1.31
BRCA1P38398 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
BRCA1P38398 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
BRCA1P38398 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
BRCA1P38398 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.84□□□□□ -1.31
BRCA1P38398 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC6.84□□□□□ -1.31
BRCA1P38398 ATM-215ENST00000530958 5718 ntTSL 2 BASIC6.84□□□□□ -1.31
BRCA1P38398 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC6.84□□□□□ -1.31
BRCA1P38398 AC211486.3-201ENST00000412694 621 ntBASIC6.84□□□□□ -1.31
BRCA1P38398 AC007161.1-204ENST00000423039 460 ntBASIC6.84□□□□□ -1.31
BRCA1P38398 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC6.84□□□□□ -1.31
BRCA1P38398 AL049745.1-201ENST00000433953 286 ntBASIC6.84□□□□□ -1.31
BRCA1P38398 RHOT1P3-201ENST00000436571 331 ntBASIC6.84□□□□□ -1.31
BRCA1P38398 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC6.84□□□□□ -1.31
BRCA1P38398 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC6.84□□□□□ -1.31
BRCA1P38398 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.84□□□□□ -1.31
BRCA1P38398 AC010435.1-201ENST00000623353 1177 ntBASIC6.84□□□□□ -1.31
BRCA1P38398 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
BRCA1P38398 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 121.2 ms