Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SNRPEP5-201ENST00000425442 278 ntBASIC6.2□□□□□ -1.42
MSX2P35548 MTCO1P45-201ENST00000431457 267 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AC016396.1-201ENST00000440189 328 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 BX005266.3-201ENST00000443013 1075 ntBASIC6.2□□□□□ -1.42
MSX2P35548 TVP23CP1-201ENST00000450317 639 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC6.2□□□□□ -1.42
MSX2P35548 RN7SL228P-201ENST00000470060 303 ntBASIC6.2□□□□□ -1.42
MSX2P35548 CBX1P5-201ENST00000475330 559 ntBASIC6.2□□□□□ -1.42
MSX2P35548 PPP1R2P6-201ENST00000478565 588 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AP002026.1-204ENST00000506454 749 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 HMMR-AS1-201ENST00000514724 697 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 MTCYBP44-201ENST00000514835 823 ntBASIC6.2□□□□□ -1.42
MSX2P35548 RPS20-202ENST00000518875 671 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 AC010306.1-201ENST00000523223 1117 ntBASIC6.2□□□□□ -1.42
MSX2P35548 IGHV1-14-201ENST00000523391 241 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC6.2□□□□□ -1.42
MSX2P35548 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC6.2□□□□□ -1.42
MSX2P35548 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 AC006205.2-201ENST00000538943 373 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 AC023050.2-201ENST00000544968 387 ntBASIC6.2□□□□□ -1.42
MSX2P35548 HIGD1AP9-201ENST00000550710 279 ntBASIC6.2□□□□□ -1.42
MSX2P35548 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC6.2□□□□□ -1.42
MSX2P35548 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC6.2□□□□□ -1.42
MSX2P35548 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 MTND4P33-201ENST00000556706 766 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 AC092868.3-201ENST00000560515 784 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AC007494.1-201ENST00000562293 760 ntBASIC6.2□□□□□ -1.42
MSX2P35548 CMC2-213ENST00000565914 528 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 MIR744-201ENST00000578242 98 ntBASIC6.2□□□□□ -1.42
MSX2P35548 DHFRP1-201ENST00000579682 559 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AC090774.2-201ENST00000584708 322 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AP005131.5-201ENST00000585817 498 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.2□□□□□ -1.42
MSX2P35548 AL589765.5-201ENST00000596133 515 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AL049840.5-201ENST00000602827 552 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AC079880.2-201ENST00000603790 1213 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AL590032.1-201ENST00000604920 252 ntBASIC6.2□□□□□ -1.42
MSX2P35548 HMGB1P51-201ENST00000605166 638 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AC122710.3-201ENST00000606566 541 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AC092106.3-201ENST00000611308 722 ntBASIC6.2□□□□□ -1.42
MSX2P35548 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC6.2□□□□□ -1.42
MSX2P35548 MIR6731-201ENST00000614863 72 ntBASIC6.2□□□□□ -1.42
MSX2P35548 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.2□□□□□ -1.42
MSX2P35548 CR382285.2-201ENST00000624662 1495 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AL512353.3-201ENST00000417517 1326 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
MSX2P35548 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 BIN2P1-201ENST00000504996 1530 ntBASIC6.2□□□□□ -1.42
MSX2P35548 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 ZNF710-AS1-202ENST00000620791 2133 ntBASIC6.19□□□□□ -1.42
MSX2P35548 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 ZNF806-201ENST00000438300 1774 ntBASIC6.19□□□□□ -1.42
MSX2P35548 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 AL359955.1-201ENST00000455242 3275 ntBASIC6.19□□□□□ -1.42
MSX2P35548 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
MSX2P35548 RN7SKP257-201ENST00000364525 309 ntBASIC6.19□□□□□ -1.42
MSX2P35548 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 NOX1-203ENST00000372964 661 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 SNORD116-9-201ENST00000384000 95 ntBASIC6.19□□□□□ -1.42
MSX2P35548 SNORD116-3-201ENST00000384287 95 ntBASIC6.19□□□□□ -1.42
MSX2P35548 SNORD116-7-201ENST00000384404 95 ntBASIC6.19□□□□□ -1.42
MSX2P35548 SNORD116-5-201ENST00000384462 95 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC007068.1-201ENST00000396690 844 ntBASIC6.19□□□□□ -1.42
MSX2P35548 RNA5SP231-201ENST00000410496 138 ntBASIC6.19□□□□□ -1.42
MSX2P35548 RANP4-201ENST00000413361 655 ntBASIC6.19□□□□□ -1.42
MSX2P35548 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 AC017078.1-201ENST00000416146 368 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 AL604028.1-201ENST00000430643 598 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 RAB9AP5-201ENST00000437794 597 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 RAB9AP2-201ENST00000443911 597 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 AL929410.2-201ENST00000451170 189 ntBASIC6.19□□□□□ -1.42
MSX2P35548 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms