Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC096576.1-201ENST00000489014 359 ntBASIC7.28□□□□□ -1.24
MSX1P28360 SNRPD2P1-201ENST00000489253 354 ntBASIC7.28□□□□□ -1.24
MSX1P28360 RPL15P21-201ENST00000495592 567 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 SETP14-201ENST00000497538 873 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 AC139272.1-201ENST00000505516 640 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC122710.2-201ENST00000506093 596 ntTSL 4 BASIC7.28□□□□□ -1.24
MSX1P28360 AC107385.1-201ENST00000507985 778 ntBASIC7.28□□□□□ -1.24
MSX1P28360 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 AC105914.1-201ENST00000511798 226 ntBASIC7.28□□□□□ -1.24
MSX1P28360 SAP18P1-201ENST00000512058 390 ntBASIC7.28□□□□□ -1.24
MSX1P28360 IGHVIII-82-201ENST00000522058 250 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 AC107959.3-202ENST00000523806 450 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 ZNF345-205ENST00000526123 458 ntTSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 AP003119.2-201ENST00000528075 336 ntTSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 OR5AN2P-201ENST00000534535 896 ntBASIC7.28□□□□□ -1.24
MSX1P28360 FXYD5-207ENST00000541435 898 ntAPPRIS P2 TSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 AC008127.2-201ENST00000549925 1075 ntBASIC7.28□□□□□ -1.24
MSX1P28360 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 AC090515.3-201ENST00000560431 315 ntBASIC7.28□□□□□ -1.24
MSX1P28360 CYP4A44P-201ENST00000569984 154 ntBASIC7.28□□□□□ -1.24
MSX1P28360 RN7SL376P-201ENST00000578594 264 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC7.28□□□□□ -1.24
MSX1P28360 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC7.28□□□□□ -1.24
MSX1P28360 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC7.28□□□□□ -1.24
MSX1P28360 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC7.28□□□□□ -1.24
MSX1P28360 AC243960.3-201ENST00000599316 580 ntTSL 4 BASIC7.28□□□□□ -1.24
MSX1P28360 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 U1.22-201ENST00000605806 164 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC000068.3-201ENST00000607934 427 ntBASIC7.28□□□□□ -1.24
MSX1P28360 HTR1DP1-201ENST00000616500 888 ntBASIC7.28□□□□□ -1.24
MSX1P28360 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 AC245028.3-201ENST00000618197 285 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC005790.1-201ENST00000619774 450 ntBASIC7.28□□□□□ -1.24
MSX1P28360 PPP3CB-AS1-214ENST00000620432 654 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 AC007342.8-201ENST00000623278 678 ntBASIC7.28□□□□□ -1.24
MSX1P28360 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 NFRKB-203ENST00000524794 4351 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 LINC00598-208ENST00000617777 2551 ntTSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 AC091305.2-201ENST00000624049 1576 ntBASIC7.28□□□□□ -1.24
MSX1P28360 CHODL-203ENST00000400127 2239 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 NQO1-203ENST00000379047 2527 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 PARP1P1-201ENST00000413631 3026 ntBASIC7.27□□□□□ -1.24
MSX1P28360 TUBBP10-201ENST00000427668 1301 ntBASIC7.27□□□□□ -1.24
MSX1P28360 DCAF13P3-201ENST00000561147 1334 ntBASIC7.27□□□□□ -1.24
MSX1P28360 AC020549.1-201ENST00000536916 1440 ntBASIC7.27□□□□□ -1.24
MSX1P28360 AC090181.3-201ENST00000624777 1514 ntBASIC7.27□□□□□ -1.25
MSX1P28360 CDC27-201ENST00000066544 5801 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
MSX1P28360 LRRC37A11P-202ENST00000579258 3717 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 CPA4-201ENST00000222482 2797 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
MSX1P28360 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
MSX1P28360 GAPVD1-204ENST00000394083 4747 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 GIMAP8-201ENST00000307271 4184 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
MSX1P28360 HMGB1P5-201ENST00000255320 642 ntBASIC7.27□□□□□ -1.25
MSX1P28360 SYF2-202ENST00000354361 926 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 RNU6-543P-201ENST00000362576 108 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AC068389.3-201ENST00000373384 529 ntTSL 4 BASIC7.27□□□□□ -1.25
MSX1P28360 MIR525-201ENST00000384978 85 ntBASIC7.27□□□□□ -1.25
MSX1P28360 MSRB1P1-201ENST00000396851 354 ntBASIC7.27□□□□□ -1.25
MSX1P28360 RN7SKP89-201ENST00000410774 242 ntBASIC7.27□□□□□ -1.25
MSX1P28360 FCF1P2-201ENST00000415284 583 ntBASIC7.27□□□□□ -1.25
MSX1P28360 RBMY2FP-202ENST00000420346 1263 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AL590714.1-201ENST00000420498 379 ntTSL 3 BASIC7.27□□□□□ -1.25
MSX1P28360 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 AL445524.1-205ENST00000425412 392 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 LDHAP2-201ENST00000437325 985 ntBASIC7.27□□□□□ -1.25
MSX1P28360 LINC01747-201ENST00000437696 1067 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC7.27□□□□□ -1.25
MSX1P28360 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 EIPR1-IT1-201ENST00000454977 718 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 SULT1D1P-201ENST00000458020 882 ntBASIC7.27□□□□□ -1.25
MSX1P28360 RPS3AP49-201ENST00000472161 790 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AC023886.1-201ENST00000506057 685 ntTSL 3 BASIC7.27□□□□□ -1.25
MSX1P28360 RPL32P3-203ENST00000506593 498 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 AC112225.1-201ENST00000508230 297 ntBASIC7.27□□□□□ -1.25
MSX1P28360 NDUFB4P2-201ENST00000509515 391 ntBASIC7.27□□□□□ -1.25
MSX1P28360 Y_RNA.704-201ENST00000516851 102 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 OR5M7P-201ENST00000526140 972 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AC026111.1-201ENST00000551090 1195 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AC022898.1-202ENST00000560864 806 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 AC073657.1-202ENST00000562063 334 ntTSL 3 BASIC7.27□□□□□ -1.25
MSX1P28360 AC007495.1-202ENST00000565155 559 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 DNM1P33-201ENST00000565222 270 ntBASIC7.27□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms