Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC6.92□□□□□ -1.3
COL8A1P27658 OR4C2P-201ENST00000530855 1064 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 AP003119.1-201ENST00000533437 538 ntTSL 4 BASIC6.92□□□□□ -1.3
COL8A1P27658 NXPE2P1-201ENST00000543705 726 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC6.92□□□□□ -1.3
COL8A1P27658 AC093249.1-201ENST00000567049 203 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 AC019322.1-201ENST00000571869 389 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC6.92□□□□□ -1.3
COL8A1P27658 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC6.92□□□□□ -1.3
COL8A1P27658 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC6.92□□□□□ -1.3
COL8A1P27658 RPS28P1-201ENST00000604589 187 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 AC004853.1-201ENST00000604902 698 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC6.92□□□□□ -1.3
COL8A1P27658 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 AC009248.2-201ENST00000619826 254 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 AC006504.8-201ENST00000621046 635 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 AC090971.5-201ENST00000621102 293 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC6.92□□□□□ -1.3
COL8A1P27658 MFSD8-245ENST00000641743 948 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 LINC01721-201ENST00000457274 2376 ntTSL 2 BASIC6.92□□□□□ -1.3
COL8A1P27658 C1orf87-201ENST00000371201 2028 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 ZNF430-201ENST00000261560 3923 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 VTI1A-202ENST00000432306 1738 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 AOX2P-204ENST00000487742 3284 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC6.92□□□□□ -1.3
COL8A1P27658 LRRC8B-206ENST00000640258 8034 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
COL8A1P27658 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 AP005901.5-201ENST00000545779 1796 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 TRIM55-204ENST00000353317 2624 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 EEF1A1P16-201ENST00000325349 1414 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 PSG9-205ENST00000443718 1421 ntTSL 2 BASIC6.92□□□□□ -1.3
COL8A1P27658 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC6.92□□□□□ -1.3
COL8A1P27658 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 AL031651.1-201ENST00000615357 1438 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 AC091152.4-201ENST00000623480 3483 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 OPTN-203ENST00000378748 3521 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 ZNF781-201ENST00000358582 3147 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.92□□□□□ -1.3
COL8A1P27658 LINC00558-201ENST00000569422 3163 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL8A1P27658 FAM205BP-202ENST00000399773 4009 ntBASIC6.92□□□□□ -1.3
COL8A1P27658 AP002765.1-201ENST00000528675 1507 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 GSTO2-202ENST00000369707 6423 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL8A1P27658 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL8A1P27658 ZMAT4-201ENST00000297737 2466 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
COL8A1P27658 AL034370.1-201ENST00000397254 1590 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 TRAF6P1-201ENST00000429404 1558 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 CSRNP3-203ENST00000409420 2545 ntTSL 5 BASIC6.91□□□□□ -1.3
COL8A1P27658 RUNX1T1-203ENST00000396218 3463 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL8A1P27658 UGT2B26P-201ENST00000508672 1613 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 ATG13-203ENST00000524625 4014 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL8A1P27658 PIWIL3-202ENST00000527701 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL8A1P27658 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL8A1P27658 SKIV2L2-201ENST00000230640 4192 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL8A1P27658 GEMIN6-201ENST00000281950 3728 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL8A1P27658 ABCA4-207ENST00000536513 3740 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL8A1P27658 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC6.91□□□□□ -1.3
COL8A1P27658 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC6.91□□□□□ -1.3
COL8A1P27658 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC6.91□□□□□ -1.3
COL8A1P27658 AC011155.1-201ENST00000316512 456 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 RNU6-501P-201ENST00000364072 100 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 Y_RNA.302-201ENST00000364997 102 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL8A1P27658 SNORA10-201ENST00000384084 133 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 Y_RNA.452-201ENST00000384202 108 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 MIR323B-201ENST00000385269 82 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 RNU6-847P-201ENST00000411115 108 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 AC004986.1-201ENST00000414855 607 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 AL358779.1-201ENST00000415465 400 ntTSL 2 BASIC6.91□□□□□ -1.3
COL8A1P27658 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC6.91□□□□□ -1.3
COL8A1P27658 AC009161.1-201ENST00000417306 376 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC6.91□□□□□ -1.3
COL8A1P27658 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC6.91□□□□□ -1.3
COL8A1P27658 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6.91□□□□□ -1.3
COL8A1P27658 PSMD8P1-201ENST00000436275 769 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC6.91□□□□□ -1.3
COL8A1P27658 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC6.91□□□□□ -1.3
COL8A1P27658 FANK1-AS1-201ENST00000445458 428 ntTSL 3 BASIC6.91□□□□□ -1.3
COL8A1P27658 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC6.91□□□□□ -1.3
COL8A1P27658 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 AC009244.1-201ENST00000450566 258 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC6.91□□□□□ -1.3
COL8A1P27658 OFD1P4Y-201ENST00000455273 1179 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 TNR-IT1-201ENST00000455447 630 ntTSL 3 BASIC6.91□□□□□ -1.3
COL8A1P27658 SNRPFP4-201ENST00000456366 242 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 MTND5P22-201ENST00000458380 195 ntBASIC6.91□□□□□ -1.3
COL8A1P27658 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC6.91□□□□□ -1.3
COL8A1P27658 ATG10-208ENST00000513634 618 ntTSL 2 BASIC6.91□□□□□ -1.3
COL8A1P27658 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC6.91□□□□□ -1.3
COL8A1P27658 DERA-209ENST00000532964 854 ntTSL 5 BASIC6.91□□□□□ -1.3
COL8A1P27658 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC6.91□□□□□ -1.3
COL8A1P27658 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC6.91□□□□□ -1.3
COL8A1P27658 AC009117.3-201ENST00000568136 543 ntTSL 4 BASIC6.91□□□□□ -1.3
COL8A1P27658 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.91□□□□□ -1.3
COL8A1P27658 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC6.91□□□□□ -1.3
COL8A1P27658 AC020908.2-201ENST00000595134 405 ntTSL 2 BASIC6.91□□□□□ -1.3
COL8A1P27658 MARK3P1-201ENST00000604796 643 ntBASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms