Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
COL6A1P12109 RNA5SP346-201ENST00000363541 121 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 AC008171.1-201ENST00000395058 200 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 CCNB2P1-201ENST00000399411 1150 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 AC096537.2-201ENST00000413707 714 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 PTCD2P2-201ENST00000415579 1095 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC7.11□□□□□ -1.27
COL6A1P12109 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC7.11□□□□□ -1.27
COL6A1P12109 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC7.11□□□□□ -1.27
COL6A1P12109 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC7.11□□□□□ -1.27
COL6A1P12109 RPL31P53-201ENST00000457065 348 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 RPSAP39-201ENST00000467439 883 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 SEPT7P6-201ENST00000469999 1143 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC7.11□□□□□ -1.27
COL6A1P12109 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC7.11□□□□□ -1.27
COL6A1P12109 AC083906.1-201ENST00000509298 406 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC7.11□□□□□ -1.27
COL6A1P12109 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC7.11□□□□□ -1.27
COL6A1P12109 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC7.11□□□□□ -1.27
COL6A1P12109 MTCO3P28-201ENST00000513351 515 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC7.11□□□□□ -1.27
COL6A1P12109 SOX5P1-201ENST00000524155 1127 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC7.11□□□□□ -1.27
COL6A1P12109 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC7.11□□□□□ -1.27
COL6A1P12109 AC011270.1-201ENST00000558606 583 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC7.11□□□□□ -1.27
COL6A1P12109 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC7.11□□□□□ -1.27
COL6A1P12109 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC7.11□□□□□ -1.27
COL6A1P12109 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC7.11□□□□□ -1.27
COL6A1P12109 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 AC008751.2-201ENST00000597885 980 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC7.11□□□□□ -1.27
COL6A1P12109 AL021707.7-201ENST00000607991 416 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC7.11□□□□□ -1.27
COL6A1P12109 AC084036.1-201ENST00000609190 508 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC7.11□□□□□ -1.27
COL6A1P12109 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC7.11□□□□□ -1.27
COL6A1P12109 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC7.11□□□□□ -1.27
COL6A1P12109 AP002967.1-201ENST00000624203 539 ntBASIC7.11□□□□□ -1.27
COL6A1P12109 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
COL6A1P12109 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL6A1P12109 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
COL6A1P12109 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC7.11□□□□□ -1.27
COL6A1P12109 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC7.1□□□□□ -1.27
COL6A1P12109 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
COL6A1P12109 MTCO1P25-201ENST00000414449 1799 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 AC008627.1-201ENST00000517511 1704 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC7.1□□□□□ -1.27
COL6A1P12109 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
COL6A1P12109 FUNDC2P3-201ENST00000334716 533 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 MIR143-201ENST00000385300 106 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 AL356057.1-202ENST00000402263 756 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 RN7SKP286-201ENST00000410894 299 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
COL6A1P12109 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC7.1□□□□□ -1.27
COL6A1P12109 RCC2P2-201ENST00000422174 918 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 MORF4L1P5-201ENST00000433352 961 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 AC092647.3-201ENST00000443044 633 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC7.1□□□□□ -1.27
COL6A1P12109 RPL34P33-201ENST00000486062 334 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 MTND6P8-201ENST00000503471 522 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 AC114781.3-201ENST00000512083 142 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC7.1□□□□□ -1.27
COL6A1P12109 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
COL6A1P12109 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 AC108673.3-201ENST00000609183 335 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 SDR42E1P1-201ENST00000611327 477 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 AL078595.3-201ENST00000623815 1166 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC7.1□□□□□ -1.27
COL6A1P12109 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC7.1□□□□□ -1.27
COL6A1P12109 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC7.1□□□□□ -1.27
COL6A1P12109 AC119674.1-220ENST00000641502 1048 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
COL6A1P12109 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 AC093278.2-201ENST00000564956 2485 ntBASIC7.1□□□□□ -1.27
COL6A1P12109 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
COL6A1P12109 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms