Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NANOGNBP2-201ENST00000544753 553 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
HMGB1P09429 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC7.59□□□□□ -1.19
HMGB1P09429 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC7.59□□□□□ -1.19
HMGB1P09429 AC133552.4-201ENST00000576103 676 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC7.59□□□□□ -1.19
HMGB1P09429 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.59□□□□□ -1.19
HMGB1P09429 AC024589.2-201ENST00000605642 1294 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 AL589743.6-201ENST00000611025 117 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 AC024255.1-201ENST00000614376 102 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 AC068213.1-201ENST00000625124 226 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 CLUHP10-201ENST00000631979 980 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 AC135068.11-201ENST00000636378 921 ntBASIC7.59□□□□□ -1.19
HMGB1P09429 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC7.59□□□□□ -1.19
HMGB1P09429 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC7.59□□□□□ -1.19
HMGB1P09429 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC7.59□□□□□ -1.19
HMGB1P09429 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
HMGB1P09429 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.2
HMGB1P09429 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.2
HMGB1P09429 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC7.59□□□□□ -1.2
HMGB1P09429 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC7.59□□□□□ -1.2
HMGB1P09429 CREM-217ENST00000439705 2306 ntTSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 HSPD1P11-201ENST00000508643 1702 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 AC018717.1-201ENST00000457712 1505 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 TINAG-202ENST00000370864 692 ntTSL 2 BASIC7.58□□□□□ -1.2
HMGB1P09429 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC7.58□□□□□ -1.2
HMGB1P09429 RNU6-178P-201ENST00000384631 104 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 OR2W4P-201ENST00000406496 926 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 RN7SKP281-201ENST00000410472 352 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 RNA5SP296-201ENST00000410523 111 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 RN7SKP161-201ENST00000411110 305 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 CYP4F30P-202ENST00000420048 405 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC7.58□□□□□ -1.2
HMGB1P09429 RPS26P47-201ENST00000427219 348 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 PTP4A1P3-201ENST00000433661 420 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 RPL34P26-201ENST00000445636 354 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC7.58□□□□□ -1.2
HMGB1P09429 MTND2P6-201ENST00000455337 1030 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 RNU6-1218P-201ENST00000458990 108 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 RN7SL502P-201ENST00000481857 290 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC7.58□□□□□ -1.2
HMGB1P09429 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 AC098799.1-201ENST00000504752 800 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC7.58□□□□□ -1.2
HMGB1P09429 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 AL133399.1-201ENST00000527476 298 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 PSMA6P4-201ENST00000603247 718 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 MIR6503-201ENST00000622884 86 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
HMGB1P09429 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 AC011369.2-201ENST00000624423 1567 ntBASIC7.58□□□□□ -1.2
HMGB1P09429 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
HMGB1P09429 AC011815.2-201ENST00000618230 2021 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
HMGB1P09429 AL592429.1-201ENST00000403909 1473 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC7.57□□□□□ -1.2
HMGB1P09429 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.2
HMGB1P09429 AC006511.3-201ENST00000624929 1783 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
HMGB1P09429 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
HMGB1P09429 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
HMGB1P09429 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC7.57□□□□□ -1.2
HMGB1P09429 RNU4-31P-201ENST00000384211 141 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 MIR92A2-201ENST00000385299 75 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 AL033519.1-201ENST00000407266 307 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC7.57□□□□□ -1.2
HMGB1P09429 MTCO1P52-201ENST00000433928 531 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 AC009237.1-201ENST00000442127 744 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC7.57□□□□□ -1.2
HMGB1P09429 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC7.57□□□□□ -1.2
HMGB1P09429 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC7.57□□□□□ -1.2
HMGB1P09429 AC005912.1-201ENST00000495392 255 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 IGHVIII-38-1-201ENST00000521454 282 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC7.57□□□□□ -1.2
HMGB1P09429 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC7.57□□□□□ -1.2
HMGB1P09429 TPRX1P1-201ENST00000557620 319 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
HMGB1P09429 AC009120.3-201ENST00000563335 499 ntBASIC7.57□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms