Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 OR11H2-202ENST00000641517 1085 ntBASIC5.75□□□□□ -1.49
HOXC4P09017 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC4P09017 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC4P09017 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXC4P09017 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
HOXC4P09017 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC4P09017 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC4P09017 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.75□□□□□ -1.49
HOXC4P09017 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC4P09017 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 AC117409.1-201ENST00000470499 1310 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXC4P09017 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXC4P09017 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
HOXC4P09017 AC005225.5-201ENST00000623547 2225 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
HOXC4P09017 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 RN7SKP186-201ENST00000365371 303 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 HMGB1P20-201ENST00000402555 677 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXC4P09017 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.74□□□□□ -1.49
HOXC4P09017 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXC4P09017 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
HOXC4P09017 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXC4P09017 FRG2FP-204ENST00000453982 852 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXC4P09017 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXC4P09017 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXC4P09017 SNRPCP3-201ENST00000474888 476 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 RN7SL717P-201ENST00000478343 297 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXC4P09017 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXC4P09017 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.74□□□□□ -1.49
HOXC4P09017 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXC4P09017 DPPA2P4-201ENST00000563717 878 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 AL163952.1-202ENST00000569625 600 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXC4P09017 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXC4P09017 AL583832.1-201ENST00000603227 784 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 RN7SL787P-201ENST00000613000 284 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 AP000550.3-201ENST00000637734 379 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 AC087565.3-203ENST00000641018 837 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 AP001153.1-201ENST00000641024 338 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
HOXC4P09017 AC092724.1-201ENST00000624623 3397 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXC4P09017 AC018628.1-201ENST00000624147 3819 ntBASIC5.74□□□□□ -1.49
HOXC4P09017 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXC4P09017 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXC4P09017 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC4P09017 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.74□□□□□ -1.49
HOXC4P09017 OLMALINC-203ENST00000641087 3779 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC4P09017 AL022323.4-201ENST00000623980 13120 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXC4P09017 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
HOXC4P09017 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
HOXC4P09017 GTF2IP4-201ENST00000453092 2054 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
HOXC4P09017 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
HOXC4P09017 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXC4P09017 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC4P09017 AL033543.1-201ENST00000623440 13454 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 SNORA64.1-201ENST00000362600 132 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 AC015983.1-201ENST00000441577 373 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 AP000281.1-201ENST00000444036 316 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 RPL36AP39-201ENST00000445859 318 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 RNU1-88P-201ENST00000459274 128 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXC4P09017 RPS3AP15-201ENST00000483874 781 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.73□□□□□ -1.49
HOXC4P09017 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXC4P09017 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXC4P09017 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXC4P09017 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXC4P09017 RNU6-615P-201ENST00000516065 106 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 SCARNA6.1-201ENST00000516989 238 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 AC021678.3-201ENST00000517893 476 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 AC112191.2-201ENST00000522428 333 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 OR5D2P-201ENST00000524390 911 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 HMGB1P42-201ENST00000532126 553 ntBASIC5.73□□□□□ -1.49
HOXC4P09017 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC4P09017 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXC4P09017 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXC4P09017 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXC4P09017 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXC4P09017 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
HOXC4P09017 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.73□□□□□ -1.49
HOXC4P09017 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXC4P09017 MIR6729-201ENST00000618194 65 ntBASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms