Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC090607.5-201ENST00000615692 224 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
COL3A1P02461 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL3A1P02461 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL3A1P02461 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL3A1P02461 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL3A1P02461 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL3A1P02461 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL3A1P02461 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC7.46□□□□□ -1.21
COL3A1P02461 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC7.46□□□□□ -1.21
COL3A1P02461 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
COL3A1P02461 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
COL3A1P02461 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL3A1P02461 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL3A1P02461 DCN-218ENST00000551354 2924 ntTSL 3 BASIC7.46□□□□□ -1.22
COL3A1P02461 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC7.46□□□□□ -1.22
COL3A1P02461 AL121886.1-201ENST00000358609 435 ntBASIC7.46□□□□□ -1.22
COL3A1P02461 RN7SKP162-201ENST00000363605 345 ntBASIC7.46□□□□□ -1.22
COL3A1P02461 RN7SKP28-201ENST00000364770 305 ntBASIC7.46□□□□□ -1.22
COL3A1P02461 SSX3-202ENST00000376893 800 ntTSL 2 BASIC7.46□□□□□ -1.22
COL3A1P02461 SNORA16A-201ENST00000384342 137 ntBASIC7.46□□□□□ -1.22
COL3A1P02461 RNA5SP339-201ENST00000390987 122 ntBASIC7.46□□□□□ -1.22
COL3A1P02461 AC100832.1-201ENST00000471945 383 ntBASIC7.46□□□□□ -1.22
COL3A1P02461 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC7.46□□□□□ -1.22
COL3A1P02461 RPEP1-201ENST00000504507 658 ntBASIC7.46□□□□□ -1.22
COL3A1P02461 RBM22P12-201ENST00000567098 1255 ntBASIC7.46□□□□□ -1.22
COL3A1P02461 AC060780.2-201ENST00000589047 198 ntBASIC7.46□□□□□ -1.22
COL3A1P02461 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC7.46□□□□□ -1.22
COL3A1P02461 AC079776.5-201ENST00000641920 211 ntBASIC7.46□□□□□ -1.22
COL3A1P02461 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.22
COL3A1P02461 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC7.46□□□□□ -1.22
COL3A1P02461 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC7.46□□□□□ -1.22
COL3A1P02461 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL3A1P02461 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL3A1P02461 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
COL3A1P02461 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
COL3A1P02461 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
COL3A1P02461 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
COL3A1P02461 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC7.45□□□□□ -1.22
COL3A1P02461 MTND4LP17-201ENST00000414607 293 ntBASIC7.45□□□□□ -1.22
COL3A1P02461 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL3A1P02461 NANOGP9-201ENST00000439890 892 ntBASIC7.45□□□□□ -1.22
COL3A1P02461 H3F3BP1-201ENST00000440551 403 ntBASIC7.45□□□□□ -1.22
COL3A1P02461 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC7.45□□□□□ -1.22
COL3A1P02461 RN7SL184P-201ENST00000488308 297 ntBASIC7.45□□□□□ -1.22
COL3A1P02461 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC7.45□□□□□ -1.22
COL3A1P02461 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC7.45□□□□□ -1.22
COL3A1P02461 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC7.45□□□□□ -1.22
COL3A1P02461 NPM1P45-201ENST00000583151 559 ntBASIC7.45□□□□□ -1.22
COL3A1P02461 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC7.45□□□□□ -1.22
COL3A1P02461 GMFG-212ENST00000602185 423 ntTSL 3 BASIC7.45□□□□□ -1.22
COL3A1P02461 AC009237.13-201ENST00000603193 276 ntBASIC7.45□□□□□ -1.22
COL3A1P02461 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC7.45□□□□□ -1.22
COL3A1P02461 AL691477.1-201ENST00000624398 162 ntBASIC7.45□□□□□ -1.22
COL3A1P02461 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC7.45□□□□□ -1.22
COL3A1P02461 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC7.45□□□□□ -1.22
COL3A1P02461 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC7.45□□□□□ -1.22
COL3A1P02461 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC7.45□□□□□ -1.22
COL3A1P02461 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
COL3A1P02461 MAPK10-261ENST00000641050 3109 ntBASIC7.45□□□□□ -1.22
COL3A1P02461 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL3A1P02461 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL3A1P02461 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC7.45□□□□□ -1.22
COL3A1P02461 AC011933.2-201ENST00000578539 2790 ntBASIC7.45□□□□□ -1.22
COL3A1P02461 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL3A1P02461 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL3A1P02461 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC7.45□□□□□ -1.22
COL3A1P02461 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
COL3A1P02461 AC235565.1-201ENST00000456962 1325 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC7.44□□□□□ -1.22
COL3A1P02461 RN7SKP160-201ENST00000363804 340 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 U3.10-201ENST00000364459 214 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
COL3A1P02461 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
COL3A1P02461 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC7.44□□□□□ -1.22
COL3A1P02461 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC7.44□□□□□ -1.22
COL3A1P02461 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC7.44□□□□□ -1.22
COL3A1P02461 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.44□□□□□ -1.22
COL3A1P02461 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC7.44□□□□□ -1.22
COL3A1P02461 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC7.44□□□□□ -1.22
COL3A1P02461 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC7.44□□□□□ -1.22
COL3A1P02461 RPS23P9-201ENST00000448848 438 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC7.44□□□□□ -1.22
COL3A1P02461 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC7.44□□□□□ -1.22
COL3A1P02461 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 AC021106.1-201ENST00000509020 1058 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 RPL7L1P4-201ENST00000513004 707 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 IGKV2-19-201ENST00000518132 283 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC7.44□□□□□ -1.22
COL3A1P02461 TMF1P1-201ENST00000576058 373 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC7.44□□□□□ -1.22
COL3A1P02461 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC7.44□□□□□ -1.22
COL3A1P02461 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC7.44□□□□□ -1.22
COL3A1P02461 SUGT1P3-202ENST00000604259 383 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 AC000068.2-201ENST00000608816 460 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 AL359513.1-201ENST00000614364 557 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 AC008115.3-201ENST00000614874 549 ntBASIC7.44□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms