Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 RNA5SP514-201ENST00000363717 111 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 IL20-203ENST00000391930 1153 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 MEG8-201ENST00000414488 800 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AL663061.1-201ENST00000416625 580 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 GAPDHP57-201ENST00000424400 585 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 MTND4P28-201ENST00000426217 387 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 OR52S1P-201ENST00000427016 937 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 LINC01762-205ENST00000437308 539 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 ELOCP3-201ENST00000439303 348 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC027124.1-201ENST00000440852 466 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 DNAJC19P5-201ENST00000443295 316 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC004022.1-201ENST00000447766 1066 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 RN7SL216P-201ENST00000471607 298 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC128716.1-201ENST00000475129 166 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 RN7SL143P-201ENST00000496780 297 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 SNX18P23-201ENST00000510867 677 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 MTCYBP44-201ENST00000514835 823 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 RNU6-760P-201ENST00000516078 97 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 IGHVII-51-2-201ENST00000519778 259 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 OR4A41P-201ENST00000533053 928 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 RN7SL689P-201ENST00000577215 297 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC024267.3-201ENST00000579673 562 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 MIR4428-201ENST00000584884 73 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AL353807.4-201ENST00000604995 257 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC107952.2-201ENST00000606048 486 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 Six3os1_4.1-201ENST00000615706 324 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 U1.41-201ENST00000617626 165 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 OR2A3P-202ENST00000641249 1776 ntBASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
CCDC39Q9UFE4 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 MIR7-1-201ENST00000384871 110 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC024937.2-201ENST00000411669 1242 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC004022.2-201ENST00000413824 193 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 CDY17P-201ENST00000414121 1282 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 CDY8P-201ENST00000428380 1279 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC239367.3-201ENST00000428996 814 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 USP9YP24-201ENST00000434374 697 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC245452.2-201ENST00000435222 392 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 MTND2P21-201ENST00000436242 1042 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 USP9YP17-201ENST00000444617 696 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 CDY20P-201ENST00000447528 1279 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 RPL12P26-201ENST00000452430 487 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 RPS3AP22-201ENST00000488297 769 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AC093844.1-201ENST00000514910 1361 ntBASIC7.65□□□□□ -1.18
CCDC39Q9UFE4 AP001207.2-201ENST00000519490 539 ntBASIC7.65□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms