Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CABYR-206ENST00000463087 1792 ntAPPRIS P4 TSL 5 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC103591.2-201ENST00000265259 766 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 FGF7P2-201ENST00000332473 296 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 RNU1-122P-201ENST00000365538 156 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 TRAV8-3-201ENST00000390435 341 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC092952.1-201ENST00000397646 1209 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 S100B-203ENST00000397648 839 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 HMGB3P7-201ENST00000400214 611 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 RPS7P13-201ENST00000413955 498 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 UBTFL3-201ENST00000418934 1024 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AL365184.2-201ENST00000431139 435 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC002553.1-201ENST00000442828 802 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC019186.1-201ENST00000447019 545 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 RPS27AP15-201ENST00000447672 466 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC002486.2-201ENST00000447806 590 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC018816.1-206ENST00000474544 455 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 UBTFL6-201ENST00000477929 1024 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC090013.1-201ENST00000485147 480 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC096661.1-201ENST00000515870 822 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 SNORA48.10-201ENST00000516965 160 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 RN7SKP98-201ENST00000517070 156 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 LINC00967-204ENST00000518412 271 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC025881.1-201ENST00000518851 512 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 NPM1P6-201ENST00000521088 871 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 HIGD1AP6-201ENST00000521833 279 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 ZNF473-209ENST00000601364 603 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC022239.4-201ENST00000602626 504 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC005518.2-201ENST00000603254 282 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AL109936.2-201ENST00000605350 650 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC073389.2-201ENST00000606726 571 ntTSL 4 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AL354760.1-201ENST00000608357 643 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC006566.1-201ENST00000608943 513 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 MED24-234ENST00000614384 454 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AL357080.1-201ENST00000617394 239 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC025162.2-201ENST00000619602 560 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC073488.8-201ENST00000631952 757 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 BCAS3-234ENST00000639611 108 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC099654.12-201ENST00000639868 649 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 MIR193BHG-214ENST00000641765 509 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC023818.2-201ENST00000623817 2304 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 CEACAM5-203ENST00000405816 2354 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 SYCP1-202ENST00000369522 3522 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC016747.1-201ENST00000420918 2532 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 CSNK2A3-201ENST00000528848 1416 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 SLC24A1-212ENST00000546330 3246 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC090132.1-201ENST00000524071 1480 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 HBP1-208ENST00000468410 2704 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 AC018992.1-201ENST00000523778 2149 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 VPS35P1-201ENST00000563400 1518 ntBASIC5.89□□□□□ -1.47
CCDC140Q96MF4 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC140Q96MF4 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 ADH7-201ENST00000209665 2289 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 OR2T35-202ENST00000641268 2957 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 LINC01095-202ENST00000507726 1715 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 MTA3-201ENST00000405094 1785 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 TRIM55-202ENST00000315962 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 NBEA-202ENST00000379922 3794 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 Y_RNA.25-201ENST00000362528 102 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 RNU6-225P-201ENST00000384613 103 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 RNA5SP18-201ENST00000390935 121 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 VN1R12P-201ENST00000403778 876 ntBASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms