Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNA5SP110-201ENST00000362638 115 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 MIR188-201ENST00000385034 86 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 AL132875.1-201ENST00000403623 949 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 RPL7AP51-201ENST00000422016 760 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 AC099782.1-201ENST00000425889 474 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 RPSAP40-201ENST00000442343 891 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 RPS27P20-201ENST00000492051 246 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 AC090058.1-201ENST00000498788 435 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 CR383658.1-201ENST00000514609 734 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 AC090424.1-201ENST00000535243 736 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 BTG1P1-201ENST00000540396 508 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 MT1CP-201ENST00000567054 174 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 AL163952.1-202ENST00000569625 600 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 AP001357.1-201ENST00000586304 1053 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 AC006115.2-201ENST00000596823 202 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 AC009950.2-201ENST00000636548 183 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 AL592429.1-201ENST00000403909 1473 ntBASIC5.95□□□□□ -1.46
VPS39Q96JC1 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 MTCO1P28-201ENST00000574177 1528 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 RNU1-134P-201ENST00000362935 165 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 RN7SKP17-201ENST00000411242 351 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AC096632.2-201ENST00000438139 1239 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 CYCSP51-201ENST00000443545 318 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 AC007383.1-201ENST00000445875 636 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 AC097359.1-201ENST00000447946 463 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 AC019084.1-201ENST00000457337 432 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 AL603882.1-201ENST00000463059 681 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 RPL38P3-201ENST00000484463 213 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 IGKV2-19-201ENST00000518132 283 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 RN7SL230P-201ENST00000580835 303 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 WBP1LP12-201ENST00000604449 331 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 AL357562.1-201ENST00000624911 609 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 AC099654.6-201ENST00000636487 512 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 AC000095.2-202ENST00000637415 154 ntBASIC5.94□□□□□ -1.46
VPS39Q96JC1 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS39Q96JC1 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.94□□□□□ -1.46
VPS39Q96JC1 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC027279.1-201ENST00000568885 4284 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms