Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL132656.3-201ENST00000606384 1595 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 FTO-203ENST00000460382 1517 ntTSL 5 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AP003170.5-201ENST00000397185 335 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 RNU4-34P-201ENST00000410431 124 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 SDHDP6-201ENST00000414693 480 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 MTATP6P11-201ENST00000428071 670 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 Z68868.1-201ENST00000429048 544 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC023141.3-201ENST00000436698 278 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AP006222.1-205ENST00000450734 457 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AL139156.3-201ENST00000454802 394 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 RN7SL826P-201ENST00000479724 288 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 IGHV3-57-201ENST00000520143 280 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC008429.2-201ENST00000523057 864 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 MTND2P17-201ENST00000550281 688 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 TPRX1P1-201ENST00000557620 319 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AL731537.2-201ENST00000561565 951 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 SNORA74.4-201ENST00000607595 199 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AL137246.2-201ENST00000613439 662 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AL356752.1-201ENST00000615844 593 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC104307.1-201ENST00000616142 196 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC245014.3-201ENST00000618589 347 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AL035661.1-201ENST00000620459 1144 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AP001153.1-201ENST00000641024 338 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 CASC19-228ENST00000641414 1684 ntBASIC6.03□□□□□ -1.44
COL28A1Q2UY09 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.03□□□□□ -1.44
COL28A1Q2UY09 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.02□□□□□ -1.44
COL28A1Q2UY09 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC109780.1-201ENST00000451768 1344 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC117409.1-201ENST00000470499 1310 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 OR51C1P-202ENST00000641159 1444 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 RNA5SP110-201ENST00000362638 115 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 RNU1-46P-201ENST00000384425 164 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC019070.1-201ENST00000415008 1024 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AL512504.1-201ENST00000415494 778 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AJ239321.1-201ENST00000424255 564 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 BX119321.1-201ENST00000428912 797 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC135999.1-201ENST00000478962 479 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 NDUFA5P12-201ENST00000503796 343 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 IGLV3-6-201ENST00000523937 250 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 APPL2-203ENST00000546731 684 ntTSL 2 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 1681.4 ms