Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC013701.1-201ENST00000522657 465 ntBASIC7.37□□□□□ -1.23
COL18A1P39060 AC024940.3-201ENST00000538551 316 ntBASIC7.37□□□□□ -1.23
COL18A1P39060 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC7.37□□□□□ -1.23
COL18A1P39060 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC7.37□□□□□ -1.23
COL18A1P39060 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC7.37□□□□□ -1.23
COL18A1P39060 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC7.37□□□□□ -1.23
COL18A1P39060 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC7.37□□□□□ -1.23
COL18A1P39060 AP001885.1-201ENST00000621658 558 ntBASIC7.37□□□□□ -1.23
COL18A1P39060 TEX41-254ENST00000626394 423 ntTSL 5 BASIC7.37□□□□□ -1.23
COL18A1P39060 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 OR55B1P-203ENST00000641518 2602 ntBASIC7.37□□□□□ -1.23
COL18A1P39060 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC7.37□□□□□ -1.23
COL18A1P39060 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC7.37□□□□□ -1.23
COL18A1P39060 AC079753.1-201ENST00000623243 3868 ntBASIC7.37□□□□□ -1.23
COL18A1P39060 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 AC011493.1-201ENST00000596753 1632 ntBASIC7.37□□□□□ -1.23
COL18A1P39060 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
COL18A1P39060 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
COL18A1P39060 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC7.36□□□□□ -1.23
COL18A1P39060 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC7.36□□□□□ -1.23
COL18A1P39060 AL162456.1-201ENST00000634535 2006 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 RNU4-4P-201ENST00000364588 130 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AL133388.1-201ENST00000404509 287 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AC116036.1-201ENST00000412199 367 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC7.36□□□□□ -1.23
COL18A1P39060 PPP2R2DP1-201ENST00000420526 637 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 FAM96AP1-201ENST00000430879 482 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC7.36□□□□□ -1.23
COL18A1P39060 RPS3AP41-201ENST00000462701 778 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 RPS18P6-201ENST00000476880 458 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC7.36□□□□□ -1.23
COL18A1P39060 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 DHFRP1-201ENST00000579682 559 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC7.36□□□□□ -1.23
COL18A1P39060 AC011840.5-201ENST00000582125 771 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC7.36□□□□□ -1.23
COL18A1P39060 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
COL18A1P39060 AC009831.5-201ENST00000624000 3189 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 RAD17P2-201ENST00000451754 1977 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC7.36□□□□□ -1.23
COL18A1P39060 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC7.36□□□□□ -1.23
COL18A1P39060 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC7.36□□□□□ -1.23
COL18A1P39060 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL18A1P39060 SNORA67-201ENST00000384423 137 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 RPSAP35-201ENST00000413753 818 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AL139128.1-201ENST00000413921 941 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AL807761.1-201ENST00000417622 171 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 HNRNPA3P4-201ENST00000427514 803 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC7.36□□□□□ -1.23
COL18A1P39060 AC109462.1-201ENST00000491087 368 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 RPL37AP8-201ENST00000494116 276 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC7.36□□□□□ -1.23
COL18A1P39060 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC7.36□□□□□ -1.23
COL18A1P39060 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
COL18A1P39060 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC7.36□□□□□ -1.23
COL18A1P39060 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC7.36□□□□□ -1.23
COL18A1P39060 AL163952.1-202ENST00000569625 600 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 MIR4480-201ENST00000582492 71 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC7.36□□□□□ -1.23
COL18A1P39060 AC012557.1-201ENST00000607115 611 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 WBP1LP8-201ENST00000617401 327 ntBASIC7.36□□□□□ -1.23
COL18A1P39060 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC7.36□□□□□ -1.23
COL18A1P39060 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC7.35□□□□□ -1.23
COL18A1P39060 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL18A1P39060 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC7.35□□□□□ -1.23
COL18A1P39060 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL18A1P39060 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL18A1P39060 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL18A1P39060 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL18A1P39060 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC7.35□□□□□ -1.23
COL18A1P39060 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL18A1P39060 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC7.35□□□□□ -1.23
COL18A1P39060 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC7.35□□□□□ -1.23
COL18A1P39060 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
COL18A1P39060 HMGB1P32-201ENST00000425971 565 ntBASIC7.35□□□□□ -1.23
COL18A1P39060 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC7.35□□□□□ -1.23
COL18A1P39060 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC7.35□□□□□ -1.23
COL18A1P39060 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC7.35□□□□□ -1.23
COL18A1P39060 AL672138.1-201ENST00000450604 1015 ntBASIC7.35□□□□□ -1.23
COL18A1P39060 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC7.35□□□□□ -1.23
COL18A1P39060 AC093890.1-201ENST00000502554 540 ntBASIC7.35□□□□□ -1.23
COL18A1P39060 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC7.35□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms