Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
MSX2P35548 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.21□□□□□ -1.42
MSX2P35548 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 AC092724.1-201ENST00000624623 3397 ntBASIC6.21□□□□□ -1.42
MSX2P35548 AC137056.2-201ENST00000624055 1958 ntBASIC6.21□□□□□ -1.42
MSX2P35548 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.21□□□□□ -1.42
MSX2P35548 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
MSX2P35548 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
MSX2P35548 RN7SKP149-201ENST00000363008 344 ntBASIC6.21□□□□□ -1.42
MSX2P35548 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
MSX2P35548 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.42
MSX2P35548 Z86062.1-201ENST00000406773 777 ntBASIC6.21□□□□□ -1.42
MSX2P35548 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
MSX2P35548 Y_RNA.599-201ENST00000410489 109 ntBASIC6.21□□□□□ -1.42
MSX2P35548 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC6.21□□□□□ -1.42
MSX2P35548 AC109638.1-201ENST00000417406 326 ntBASIC6.21□□□□□ -1.42
MSX2P35548 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
MSX2P35548 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC6.21□□□□□ -1.42
MSX2P35548 AC023141.1-201ENST00000419418 379 ntBASIC6.21□□□□□ -1.42
MSX2P35548 SEPT2P1-201ENST00000419651 180 ntBASIC6.21□□□□□ -1.42
MSX2P35548 MFSD13B-201ENST00000420133 1290 ntBASIC6.21□□□□□ -1.42
MSX2P35548 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
MSX2P35548 GAPDHP57-201ENST00000424400 585 ntBASIC6.21□□□□□ -1.42
MSX2P35548 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 MYL6P3-201ENST00000436904 432 ntBASIC6.21□□□□□ -1.42
MSX2P35548 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
MSX2P35548 ARL5AP3-201ENST00000439327 386 ntBASIC6.21□□□□□ -1.42
MSX2P35548 RPL7P14-201ENST00000449851 741 ntBASIC6.21□□□□□ -1.42
MSX2P35548 VNN3-210ENST00000450865 596 ntTSL 4 BASIC6.21□□□□□ -1.42
MSX2P35548 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
MSX2P35548 USP9YP10-201ENST00000454868 628 ntBASIC6.21□□□□□ -1.42
MSX2P35548 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC6.21□□□□□ -1.42
MSX2P35548 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC6.21□□□□□ -1.42
MSX2P35548 MARK2P8-201ENST00000476069 952 ntBASIC6.21□□□□□ -1.42
MSX2P35548 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
MSX2P35548 AC138409.2-202ENST00000507274 458 ntBASIC6.21□□□□□ -1.42
MSX2P35548 C4orf19-203ENST00000508175 828 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 USP9YP5-201ENST00000511770 630 ntBASIC6.21□□□□□ -1.42
MSX2P35548 AC097460.2-201ENST00000511857 741 ntBASIC6.21□□□□□ -1.42
MSX2P35548 EIF3KP1-201ENST00000513279 656 ntBASIC6.21□□□□□ -1.42
MSX2P35548 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 HMGB1P46-201ENST00000520062 610 ntBASIC6.21□□□□□ -1.42
MSX2P35548 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 LRRC6P1-201ENST00000532188 885 ntBASIC6.21□□□□□ -1.42
MSX2P35548 GCSHP4-201ENST00000538792 439 ntBASIC6.21□□□□□ -1.42
MSX2P35548 NOP56P3-201ENST00000549457 385 ntBASIC6.21□□□□□ -1.42
MSX2P35548 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
MSX2P35548 FAM30C-201ENST00000561158 410 ntBASIC6.21□□□□□ -1.42
MSX2P35548 AC010735.1-201ENST00000567305 1026 ntBASIC6.21□□□□□ -1.42
MSX2P35548 ARL17A-205ENST00000573185 581 ntAPPRIS ALT2 TSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC6.21□□□□□ -1.42
MSX2P35548 ARL17B-206ENST00000575698 581 ntTSL 3 BASIC6.21□□□□□ -1.42
MSX2P35548 MIR5705-201ENST00000579870 89 ntBASIC6.21□□□□□ -1.42
MSX2P35548 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 MIR3159-201ENST00000584572 74 ntBASIC6.21□□□□□ -1.42
MSX2P35548 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 AC015849.2-201ENST00000605738 409 ntBASIC6.21□□□□□ -1.42
MSX2P35548 AC012213.4-201ENST00000606457 354 ntBASIC6.21□□□□□ -1.42
MSX2P35548 AL031777.2-201ENST00000611953 196 ntBASIC6.21□□□□□ -1.42
MSX2P35548 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
MSX2P35548 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
MSX2P35548 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
MSX2P35548 SUCLA2P2-201ENST00000417269 1309 ntBASIC6.21□□□□□ -1.42
MSX2P35548 AC020658.2-201ENST00000559030 4020 ntBASIC6.21□□□□□ -1.42
MSX2P35548 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
MSX2P35548 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.2□□□□□ -1.42
MSX2P35548 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC6.2□□□□□ -1.42
MSX2P35548 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
MSX2P35548 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
MSX2P35548 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
MSX2P35548 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC6.2□□□□□ -1.42
MSX2P35548 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
MSX2P35548 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC6.2□□□□□ -1.42
MSX2P35548 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 ARAFP1-201ENST00000422172 605 ntBASIC6.2□□□□□ -1.42
MSX2P35548 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC6.2□□□□□ -1.42
MSX2P35548 VN1R42P-201ENST00000424651 344 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms