Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC083982.1-201ENST00000485679 344 ntBASIC7.06□□□□□ -1.28
COL5A3P25940 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC7.06□□□□□ -1.28
COL5A3P25940 RN7SKP99-201ENST00000517028 307 ntBASIC7.06□□□□□ -1.28
COL5A3P25940 AL121594.2-201ENST00000541658 472 ntBASIC7.06□□□□□ -1.28
COL5A3P25940 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC7.06□□□□□ -1.28
COL5A3P25940 AC100827.5-201ENST00000615883 426 ntBASIC7.06□□□□□ -1.28
COL5A3P25940 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
COL5A3P25940 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 DPY19L1P1-201ENST00000417811 2594 ntBASIC7.06□□□□□ -1.28
COL5A3P25940 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
COL5A3P25940 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL5A3P25940 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL5A3P25940 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
COL5A3P25940 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
COL5A3P25940 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL5A3P25940 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL5A3P25940 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL5A3P25940 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
COL5A3P25940 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL5A3P25940 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
COL5A3P25940 MIR551A-201ENST00000385042 96 ntBASIC7.05□□□□□ -1.28
COL5A3P25940 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC7.05□□□□□ -1.28
COL5A3P25940 AL139128.1-201ENST00000413921 941 ntBASIC7.05□□□□□ -1.28
COL5A3P25940 FAM96AP1-201ENST00000430879 482 ntBASIC7.05□□□□□ -1.28
COL5A3P25940 RPS11P7-201ENST00000442125 465 ntBASIC7.05□□□□□ -1.28
COL5A3P25940 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC7.05□□□□□ -1.28
COL5A3P25940 RPS3AP41-201ENST00000462701 778 ntBASIC7.05□□□□□ -1.28
COL5A3P25940 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC7.05□□□□□ -1.28
COL5A3P25940 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC7.05□□□□□ -1.28
COL5A3P25940 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC7.05□□□□□ -1.28
COL5A3P25940 HNRNPCP1-201ENST00000556181 766 ntBASIC7.05□□□□□ -1.28
COL5A3P25940 AC114947.2-201ENST00000565748 2125 ntBASIC7.05□□□□□ -1.28
COL5A3P25940 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC7.05□□□□□ -1.28
COL5A3P25940 AP001885.1-201ENST00000621658 558 ntBASIC7.05□□□□□ -1.28
COL5A3P25940 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
COL5A3P25940 AL031595.3-201ENST00000624919 14262 ntBASIC7.05□□□□□ -1.28
COL5A3P25940 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL5A3P25940 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC7.05□□□□□ -1.28
COL5A3P25940 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL5A3P25940 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC7.05□□□□□ -1.28
COL5A3P25940 RAD17P2-201ENST00000451754 1977 ntBASIC7.05□□□□□ -1.28
COL5A3P25940 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL5A3P25940 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL5A3P25940 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC7.04□□□□□ -1.28
COL5A3P25940 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC7.04□□□□□ -1.28
COL5A3P25940 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC7.04□□□□□ -1.28
COL5A3P25940 RNU6ATAC7P-201ENST00000408111 127 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 RPSAP35-201ENST00000413753 818 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC7.04□□□□□ -1.28
COL5A3P25940 SRSF1P1-201ENST00000424058 520 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 AC073410.1-201ENST00000435125 589 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
COL5A3P25940 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.04□□□□□ -1.28
COL5A3P25940 CBX1P2-201ENST00000453841 458 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC7.04□□□□□ -1.28
COL5A3P25940 RPS17P5-201ENST00000498293 408 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 RNU6ATAC24P-201ENST00000516811 135 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC7.04□□□□□ -1.28
COL5A3P25940 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC7.04□□□□□ -1.28
COL5A3P25940 FAM25E-202ENST00000608562 189 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC7.04□□□□□ -1.28
COL5A3P25940 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC7.04□□□□□ -1.28
COL5A3P25940 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC7.04□□□□□ -1.28
COL5A3P25940 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
COL5A3P25940 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 AC079753.1-201ENST00000623243 3868 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC7.04□□□□□ -1.28
COL5A3P25940 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL5A3P25940 RNA5SP305-201ENST00000362665 119 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 SNORD8-201ENST00000363915 110 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 RNU4-4P-201ENST00000364588 130 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 SNORA67-201ENST00000384423 137 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 RPL37P18-201ENST00000411602 243 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 RPL37AP8-201ENST00000494116 276 ntBASIC7.04□□□□□ -1.28
COL5A3P25940 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC7.04□□□□□ -1.28
COL5A3P25940 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC7.04□□□□□ -1.28
COL5A3P25940 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC7.04□□□□□ -1.28
COL5A3P25940 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC7.04□□□□□ -1.28
COL5A3P25940 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms