Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.58□□□□□ -1.52
COL5A1P20908 OR5D15P-201ENST00000531671 942 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.58□□□□□ -1.52
COL5A1P20908 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
COL5A1P20908 SUGT1P3-202ENST00000604259 383 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 AL355974.3-201ENST00000617383 467 ntBASIC5.58□□□□□ -1.52
COL5A1P20908 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.58□□□□□ -1.52
COL5A1P20908 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.57□□□□□ -1.52
COL5A1P20908 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
COL5A1P20908 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
COL5A1P20908 TTC3P1-201ENST00000399586 6081 ntBASIC5.57□□□□□ -1.52
COL5A1P20908 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
COL5A1P20908 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
COL5A1P20908 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
COL5A1P20908 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.57□□□□□ -1.52
COL5A1P20908 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
COL5A1P20908 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
COL5A1P20908 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 OR5W1P-201ENST00000423705 938 ntBASIC5.57□□□□□ -1.52
COL5A1P20908 RPS26P41-201ENST00000450370 284 ntBASIC5.57□□□□□ -1.52
COL5A1P20908 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL5A1P20908 GSTP1P1-201ENST00000548078 319 ntBASIC5.57□□□□□ -1.52
COL5A1P20908 AC096996.1-201ENST00000563813 325 ntBASIC5.57□□□□□ -1.52
COL5A1P20908 AC090510.2-201ENST00000617465 629 ntBASIC5.57□□□□□ -1.52
COL5A1P20908 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
COL5A1P20908 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
COL5A1P20908 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC5.57□□□□□ -1.52
COL5A1P20908 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.57□□□□□ -1.52
COL5A1P20908 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
COL5A1P20908 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.57□□□□□ -1.52
COL5A1P20908 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL5A1P20908 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.56□□□□□ -1.52
COL5A1P20908 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC5.56□□□□□ -1.52
COL5A1P20908 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.56□□□□□ -1.52
COL5A1P20908 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 GTF2IP4-201ENST00000453092 2054 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 WBP11P1-201ENST00000562560 1931 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 AL451142.1-201ENST00000375867 775 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 MIR223-201ENST00000385204 110 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 PRUNEP1-201ENST00000425846 705 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 AC245047.2-201ENST00000441060 530 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 VDAC2P4-201ENST00000452925 711 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 LDHBP2-201ENST00000456969 1005 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 CCDC11P1-201ENST00000503137 1162 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 AC139365.2-201ENST00000517972 253 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 AC126615.2-201ENST00000553003 515 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
COL5A1P20908 MIR4311-201ENST00000580794 100 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 MIR4436B2-201ENST00000581415 91 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 MIR4436B1-201ENST00000583272 91 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC5.56□□□□□ -1.52
COL5A1P20908 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 SPATA31C1-201ENST00000420021 3895 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
COL5A1P20908 AL139805.2-201ENST00000455305 2433 ntBASIC5.56□□□□□ -1.52
COL5A1P20908 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
COL5A1P20908 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL5A1P20908 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL5A1P20908 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.55□□□□□ -1.52
COL5A1P20908 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL5A1P20908 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 MIR141-201ENST00000384975 95 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 AL357752.1-201ENST00000412817 349 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 RPL38P3-201ENST00000484463 213 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 AC093890.1-201ENST00000502554 540 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.55□□□□□ -1.52
COL5A1P20908 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.55□□□□□ -1.52
COL5A1P20908 AC015720.2-201ENST00000567709 334 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.55□□□□□ -1.52
COL5A1P20908 AC105105.5-201ENST00000622635 1294 ntBASIC5.55□□□□□ -1.52
COL5A1P20908 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.55□□□□□ -1.52
COL5A1P20908 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms