Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 UBE2CP1-201ENST00000557130 554 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXA3O43365 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
HOXA3O43365 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXA3O43365 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXA3O43365 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXA3O43365 AC024267.2-201ENST00000582737 417 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXA3O43365 ZNF561-AS1-208ENST00000592851 782 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXA3O43365 AC011447.2-201ENST00000592921 283 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 AC004987.4-201ENST00000603383 338 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 AL031281.1-201ENST00000604049 488 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 CR382285.1-202ENST00000604687 547 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC5.69□□□□□ -1.5
HOXA3O43365 AC103591.3-201ENST00000608684 209 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 AL390037.1-201ENST00000610918 431 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXA3O43365 AC007786.3-201ENST00000615154 596 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXA3O43365 FRG1HP-204ENST00000617940 757 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 AC109454.4-201ENST00000623411 649 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 AC099667.1-201ENST00000624222 469 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 AC007603.3-201ENST00000636915 979 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXA3O43365 AL139254.2-202ENST00000641937 1156 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXA3O43365 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXA3O43365 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXA3O43365 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXA3O43365 AC009237.3-203ENST00000442128 3551 ntBASIC5.69□□□□□ -1.5
HOXA3O43365 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXA3O43365 CPNE4-202ENST00000502818 2120 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXA3O43365 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXA3O43365 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXA3O43365 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXA3O43365 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXA3O43365 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXA3O43365 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
HOXA3O43365 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXA3O43365 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC5.69□□□□□ -1.5
HOXA3O43365 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXA3O43365 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXA3O43365 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 VN2R3P-201ENST00000422626 1412 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 RNU6-549P-201ENST00000384433 107 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AL137058.2-203ENST00000398039 825 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXA3O43365 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 FCHSD2-202ENST00000409263 932 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 RN7SKP221-201ENST00000410420 301 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 RN7SKP254-201ENST00000410685 310 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXA3O43365 LINC01347-201ENST00000417964 355 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 Z82198.3-201ENST00000421145 199 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC004074.1-201ENST00000421810 1063 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 FAM183DP-201ENST00000421987 399 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXA3O43365 UQCRHP1-204ENST00000424609 274 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AP003385.1-201ENST00000426387 893 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXA3O43365 OSTN-AS1-201ENST00000430375 515 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 AC104698.1-201ENST00000435671 276 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 PA2G4P6-201ENST00000438325 1197 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 TRIM60P9Y-201ENST00000438459 816 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC083855.1-201ENST00000440041 258 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC064862.5-201ENST00000440618 334 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 TRIM60P11Y-201ENST00000445313 801 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 MTND6P5-201ENST00000448266 512 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 MRPL42P4-201ENST00000453267 443 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AL035407.2-201ENST00000454090 378 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC234771.3-201ENST00000454984 622 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXA3O43365 SNORA81.1-201ENST00000458922 177 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 AC005165.2-201ENST00000466070 380 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 H3F3AP5-201ENST00000475267 429 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC117394.1-201ENST00000477323 567 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXA3O43365 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXA3O43365 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXA3O43365 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 snoZ278.1-201ENST00000517059 112 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 IGLC4-201ENST00000517690 248 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXA3O43365 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXA3O43365 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms