Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 GNAS-202ENST00000306090 477 ntTSL 5 BASIC7.39□□□□□ -1.23
COL18A1P39060 RNA5SP305-201ENST00000362665 119 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 RNA5SP326-201ENST00000363209 110 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 SNORD8-201ENST00000363915 110 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 RNU1-149P-201ENST00000390870 161 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 RNA5SP91-201ENST00000390902 119 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 AK3P5-201ENST00000432033 519 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
COL18A1P39060 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC7.39□□□□□ -1.23
COL18A1P39060 FABP5P2-201ENST00000439042 408 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC7.39□□□□□ -1.23
COL18A1P39060 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC7.39□□□□□ -1.23
COL18A1P39060 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC7.39□□□□□ -1.23
COL18A1P39060 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC7.39□□□□□ -1.23
COL18A1P39060 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC7.39□□□□□ -1.23
COL18A1P39060 MIR4301-201ENST00000577203 66 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 CYCSP1-201ENST00000604815 315 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 FAM25E-202ENST00000608562 189 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 AC087385.3-201ENST00000620477 187 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC7.39□□□□□ -1.23
COL18A1P39060 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC7.39□□□□□ -1.23
COL18A1P39060 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
COL18A1P39060 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC7.39□□□□□ -1.23
COL18A1P39060 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC7.39□□□□□ -1.23
COL18A1P39060 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC7.39□□□□□ -1.23
COL18A1P39060 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC7.39□□□□□ -1.23
COL18A1P39060 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
COL18A1P39060 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC7.39□□□□□ -1.23
COL18A1P39060 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL18A1P39060 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC7.38□□□□□ -1.23
COL18A1P39060 CEACAMP7-201ENST00000444105 496 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 RPS23P2-201ENST00000463671 415 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC7.38□□□□□ -1.23
COL18A1P39060 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC7.38□□□□□ -1.23
COL18A1P39060 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC7.38□□□□□ -1.23
COL18A1P39060 HNRNPCP1-201ENST00000556181 766 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC7.38□□□□□ -1.23
COL18A1P39060 AC100827.5-201ENST00000615883 426 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 AC004836.1-201ENST00000623032 634 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL18A1P39060 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC7.38□□□□□ -1.23
COL18A1P39060 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL18A1P39060 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
COL18A1P39060 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
COL18A1P39060 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL18A1P39060 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
COL18A1P39060 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC7.38□□□□□ -1.23
COL18A1P39060 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL18A1P39060 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.23
COL18A1P39060 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7.38□□□□□ -1.23
COL18A1P39060 DNAH9-201ENST00000262442 13750 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL18A1P39060 RNU1-43P-201ENST00000365052 165 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 RNA5-8SP5-201ENST00000365304 152 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC7.38□□□□□ -1.23
COL18A1P39060 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
COL18A1P39060 RPL21P133-201ENST00000443666 476 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC7.38□□□□□ -1.23
COL18A1P39060 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC7.38□□□□□ -1.23
COL18A1P39060 CR383656.6-201ENST00000550518 394 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC7.38□□□□□ -1.23
COL18A1P39060 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC7.38□□□□□ -1.23
COL18A1P39060 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC7.38□□□□□ -1.23
COL18A1P39060 AC009163.6-201ENST00000612367 342 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 uc_338.18-201ENST00000615451 175 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 WWOX-217ENST00000620008 450 ntTSL 2 BASIC7.38□□□□□ -1.23
COL18A1P39060 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC7.38□□□□□ -1.23
COL18A1P39060 AP000550.3-201ENST00000637734 379 ntBASIC7.38□□□□□ -1.23
COL18A1P39060 AC005034.3-201ENST00000604845 1747 ntBASIC7.37□□□□□ -1.23
COL18A1P39060 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
COL18A1P39060 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC7.37□□□□□ -1.23
COL18A1P39060 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC7.37□□□□□ -1.23
COL18A1P39060 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
COL18A1P39060 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 MYPN-205ENST00000613327 6116 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL18A1P39060 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
COL18A1P39060 MIR551A-201ENST00000385042 96 ntBASIC7.37□□□□□ -1.23
COL18A1P39060 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC7.37□□□□□ -1.23
COL18A1P39060 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC7.37□□□□□ -1.23
COL18A1P39060 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.37□□□□□ -1.23
COL18A1P39060 AC105233.1-201ENST00000498840 781 ntBASIC7.37□□□□□ -1.23
COL18A1P39060 TOMM22P4-201ENST00000511318 336 ntBASIC7.37□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms