Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AP4S1-204ENST00000542754 4243 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 AC013470.2-202ENST00000635746 1895 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
VPS9D1Q9Y2B5 VPS4B-201ENST00000238497 3324 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 ABHD3-205ENST00000578270 2080 ntTSL 5 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC135731.2-201ENST00000603029 2098 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 SPARC-201ENST00000231061 3701 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 SLC17A2-202ENST00000360488 2270 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC114776.1-201ENST00000414159 4395 ntTSL 5 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 VSIG1-202ENST00000415430 3236 ntAPPRIS ALT2 TSL 2 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 TDRD9-201ENST00000339063 3447 ntTSL 5 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC073343.1-201ENST00000328239 651 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 Y_RNA.148-201ENST00000363557 117 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 RNU6-1263P-201ENST00000384601 106 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 Y_RNA.552-201ENST00000384665 112 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 RNU6-33P-201ENST00000384793 107 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 SYNE1-AS1-201ENST00000412161 553 ntTSL 2 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AL354890.1-201ENST00000413730 346 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 LINC00316-201ENST00000416722 455 ntTSL 2 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AL683807.1-201ENST00000427886 445 ntTSL 2 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 NANOGP6-201ENST00000429190 847 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC112493.1-202ENST00000436019 673 ntTSL 3 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AL096855.1-201ENST00000449895 516 ntTSL 3 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC099563.1-201ENST00000456086 418 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 APOOP2-201ENST00000461561 539 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 RPL7L1P13-201ENST00000511702 739 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 RNA5SP401-201ENST00000515920 127 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 PSAT1P1-201ENST00000518968 1106 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 LINC02301-202ENST00000555150 428 ntTSL 3 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 SUB1P2-201ENST00000556401 297 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC079075.1-201ENST00000559543 878 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 RN7SL670P-201ENST00000577235 294 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC007952.7-201ENST00000583141 757 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC100843.3-201ENST00000591796 259 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC011453.2-201ENST00000603737 729 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC233309.1-201ENST00000619522 751 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC024580.1-201ENST00000623020 674 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 CPSF7-226ENST00000626926 306 ntTSL 5 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 RBMS3-AS2-207ENST00000629416 456 ntTSL 5 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 CLOCK-202ENST00000381322 4059 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 HSD11B1-202ENST00000367027 1405 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 SKAP1-201ENST00000336915 1534 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC032011.1-201ENST00000611703 1549 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 RBBP4-206ENST00000458695 1674 ntTSL 2 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 MTND5P6-201ENST00000422338 1798 ntBASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC106869.1-203ENST00000419035 1892 ntTSL 2 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 AC019155.2-201ENST00000420224 1918 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 SP110-215ENST00000540870 2032 ntTSL 2 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 MPI-213ENST00000566377 2809 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 TBC1D5-209ENST00000429383 3156 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 LIMCH1-209ENST00000509277 3474 ntTSL 2 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 ZNF512-208ENST00000556601 3543 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 NCEH1-206ENST00000543711 4062 ntTSL 2 BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 TGFB2-201ENST00000366929 5053 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
VPS9D1Q9Y2B5 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 TRIO-201ENST00000344135 4065 ntTSL 2 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 GINS1-201ENST00000262460 3249 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CCPG1-212ENST00000569205 2970 ntTSL 2 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 IMMT-201ENST00000254636 2613 ntTSL 5 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 GBP7-201ENST00000294671 2454 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 ANAPC5-218ENST00000541887 2400 ntTSL 5 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 VPS8-204ENST00000424463 2359 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC012513.3-201ENST00000623250 2116 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 PUS3-201ENST00000227474 1843 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 DYDC2-207ENST00000616870 1723 ntAPPRIS P3 TSL 3 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC105046.1-201ENST00000566457 4997 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CEACAM1-204ENST00000358394 1484 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 TRIM48-201ENST00000417545 1445 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC020549.1-201ENST00000536916 1440 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CASC19-221ENST00000641309 1382 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CYCS-201ENST00000305786 4098 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 GOSR2-232ENST00000640051 3964 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CCL13-201ENST00000225844 851 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 Y_RNA.187-201ENST00000363918 113 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 ST3GAL3-213ENST00000372365 673 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 EIF4A1P8-201ENST00000394444 1190 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 RPL23AP29-201ENST00000397284 453 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 OR4F7P-201ENST00000402444 931 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AL590286.1-201ENST00000404178 291 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 FCHSD2-202ENST00000409263 932 ntTSL 5 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 RPL7P57-201ENST00000423238 740 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC005517.2-201ENST00000424673 553 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC8.41□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms