Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AL353795.1-201ENST00000439134 1775 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 CSDE1-214ENST00000530886 3459 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AMELY-201ENST00000215479 802 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 SP140-202ENST00000373645 814 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 SNORA51.12-201ENST00000384448 134 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 RPL34-201ENST00000394665 529 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AL391419.1-201ENST00000398901 1275 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 OR4F7P-201ENST00000402444 931 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 KRT18P52-201ENST00000404956 846 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 RN7SKP33-201ENST00000410942 340 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC004986.1-201ENST00000414855 607 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 CRIP1P3-201ENST00000416794 220 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 FNDC3CP-201ENST00000420795 1155 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 OR4F2P-201ENST00000424047 938 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 SLC44A3-AS1-205ENST00000424505 612 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 RPS24P8-201ENST00000431490 402 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AL139415.2-201ENST00000431968 163 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 RPL35P8-201ENST00000433284 337 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 MTND1P28-201ENST00000435623 950 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC092106.2-201ENST00000436597 487 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AL137027.1-201ENST00000440358 444 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 PCMTD1P3-201ENST00000451824 472 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 BZW1P1-201ENST00000454901 1240 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 PABPC1P10-201ENST00000464731 381 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 RPL23AP12-201ENST00000467573 473 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 PDCL3P4-201ENST00000489621 720 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC112219.1-201ENST00000491567 947 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 RN7SL869P-201ENST00000497032 300 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC108078.3-201ENST00000502633 489 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC017007.1-201ENST00000511960 415 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC116347.2-201ENST00000514912 523 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 RNU6-1261P-201ENST00000517194 104 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC100823.2-201ENST00000518337 699 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 CHCHD3P2-201ENST00000550751 639 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AL355076.3-201ENST00000555838 587 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AL358334.3-201ENST00000557343 535 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 PCMTD1P2-201ENST00000565017 355 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC099524.1-206ENST00000568131 407 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 DSG1-AS1-204ENST00000581856 669 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 RN7SL664P-201ENST00000584239 305 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC005537.1-202ENST00000585996 666 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 ZNF841-203ENST00000594295 3819 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC012065.4-201ENST00000602445 679 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC129492.5-201ENST00000603489 315 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC005753.1-201ENST00000623837 618 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AL356596.1-201ENST00000624230 379 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 NUMB-214ENST00000555238 3588 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 TDRD3-209ENST00000621840 2497 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 ZNF840P-201ENST00000504759 1996 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 MBTPS2-201ENST00000365779 4457 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 SCML1-203ENST00000380045 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC135352.1-201ENST00000506173 1418 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 UQCRC2-202ENST00000561553 1415 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 GABRA6-201ENST00000274545 2128 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 LRRC37A9P-201ENST00000603850 5376 ntBASIC5.9□□□□□ -1.46
CCDC140Q96MF4 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC140Q96MF4 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms