Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC6.95□□□□□ -1.3
BRCA1P38398 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
BRCA1P38398 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
BRCA1P38398 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 AOX3P-204ENST00000491025 2107 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
BRCA1P38398 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 AP000866.6-201ENST00000638898 3579 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
BRCA1P38398 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 RPL7P56-201ENST00000429441 717 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.94□□□□□ -1.3
BRCA1P38398 CEACAMP9-201ENST00000442990 513 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC6.94□□□□□ -1.3
BRCA1P38398 AC090424.1-201ENST00000535243 736 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
BRCA1P38398 PCNPP1-201ENST00000552501 511 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 CDC42EP3P1-201ENST00000601004 764 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.94□□□□□ -1.3
BRCA1P38398 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.94□□□□□ -1.3
BRCA1P38398 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
BRCA1P38398 COL6A4P1-202ENST00000487147 4317 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.94□□□□□ -1.3
BRCA1P38398 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC6.94□□□□□ -1.3
BRCA1P38398 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
BRCA1P38398 AC126755.2-208ENST00000327792 462 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 AC138969.1-213ENST00000331436 462 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.94□□□□□ -1.3
BRCA1P38398 AC016712.1-201ENST00000431088 378 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 LDHAP2-201ENST00000437325 985 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
BRCA1P38398 MIR5095-201ENST00000578844 88 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
BRCA1P38398 AC002090.1-201ENST00000625000 2138 ntBASIC6.94□□□□□ -1.3
BRCA1P38398 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC6.94□□□□□ -1.3
BRCA1P38398 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
BRCA1P38398 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC6.93□□□□□ -1.3
BRCA1P38398 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.93□□□□□ -1.3
BRCA1P38398 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
BRCA1P38398 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC6.93□□□□□ -1.3
BRCA1P38398 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.93□□□□□ -1.3
BRCA1P38398 HSPA8P14-201ENST00000552265 1805 ntBASIC6.93□□□□□ -1.3
BRCA1P38398 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.93□□□□□ -1.3
BRCA1P38398 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
BRCA1P38398 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC6.93□□□□□ -1.3
BRCA1P38398 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.93□□□□□ -1.3
BRCA1P38398 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC6.93□□□□□ -1.3
BRCA1P38398 AC009220.1-201ENST00000451614 275 ntBASIC6.93□□□□□ -1.3
BRCA1P38398 ACA64.4-201ENST00000459070 127 ntBASIC6.93□□□□□ -1.3
BRCA1P38398 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.93□□□□□ -1.3
BRCA1P38398 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC6.93□□□□□ -1.3
BRCA1P38398 RN7SL447P-201ENST00000494711 245 ntBASIC6.93□□□□□ -1.3
BRCA1P38398 AC105384.2-201ENST00000508433 640 ntBASIC6.93□□□□□ -1.3
BRCA1P38398 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.93□□□□□ -1.3
BRCA1P38398 BNIP3P1-201ENST00000547295 580 ntBASIC6.93□□□□□ -1.3
BRCA1P38398 AC027334.1-201ENST00000603257 310 ntBASIC6.93□□□□□ -1.3
BRCA1P38398 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC6.93□□□□□ -1.3
BRCA1P38398 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC6.93□□□□□ -1.3
BRCA1P38398 MAPK10-350ENST00000641777 965 ntBASIC6.93□□□□□ -1.3
BRCA1P38398 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.93□□□□□ -1.3
BRCA1P38398 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
BRCA1P38398 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.92□□□□□ -1.3
BRCA1P38398 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
BRCA1P38398 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC6.92□□□□□ -1.3
BRCA1P38398 TNPO1P2-201ENST00000426249 2665 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
BRCA1P38398 RAD17P2-201ENST00000451754 1977 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 RN7SKP113-201ENST00000363891 295 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 RNU1-149P-201ENST00000390870 161 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC6.92□□□□□ -1.3
BRCA1P38398 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC6.92□□□□□ -1.3
BRCA1P38398 AL590139.1-201ENST00000416267 400 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC6.92□□□□□ -1.3
BRCA1P38398 RPS3AP53-201ENST00000454716 778 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC6.92□□□□□ -1.3
BRCA1P38398 CCDC11P1-201ENST00000503137 1162 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.92□□□□□ -1.3
BRCA1P38398 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC6.92□□□□□ -1.3
BRCA1P38398 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC6.92□□□□□ -1.3
BRCA1P38398 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC6.92□□□□□ -1.3
BRCA1P38398 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC6.92□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms