Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC6.24□□□□□ -1.41
MSX2P35548 SYT14P1-201ENST00000481459 721 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AC126121.1-201ENST00000482313 553 ntBASIC6.24□□□□□ -1.41
MSX2P35548 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 PDPN-205ENST00000487038 607 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 AC010374.1-201ENST00000503762 1237 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AC122710.2-201ENST00000506093 596 ntTSL 4 BASIC6.24□□□□□ -1.41
MSX2P35548 ROPN1B-207ENST00000511082 782 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 RN7SKP248-201ENST00000516278 305 ntBASIC6.24□□□□□ -1.41
MSX2P35548 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 NPM1P52-201ENST00000518264 846 ntBASIC6.24□□□□□ -1.41
MSX2P35548 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 CETN3-206ENST00000522864 738 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 OR4V1P-201ENST00000525394 1140 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 OR7E128P-201ENST00000532736 1024 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 OR7E161P-201ENST00000533722 967 ntBASIC6.24□□□□□ -1.41
MSX2P35548 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 AL121579.2-201ENST00000555466 590 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AC130456.5-201ENST00000569345 510 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX2P35548 AC106785.4-201ENST00000569492 412 ntBASIC6.24□□□□□ -1.41
MSX2P35548 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC6.24□□□□□ -1.41
MSX2P35548 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX2P35548 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC6.24□□□□□ -1.41
MSX2P35548 NBR2-204ENST00000587322 63 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 BUB1P1-201ENST00000603541 607 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AC018638.7-201ENST00000605836 1114 ntBASIC6.24□□□□□ -1.41
MSX2P35548 GMDS-AS1-215ENST00000606884 580 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 AC005899.7-201ENST00000618199 588 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AC012629.3-201ENST00000623397 328 ntBASIC6.24□□□□□ -1.41
MSX2P35548 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC6.24□□□□□ -1.41
MSX2P35548 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX2P35548 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX2P35548 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX2P35548 FRG1DP-201ENST00000635586 771 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AC083865.1-201ENST00000636634 831 ntBASIC6.24□□□□□ -1.41
MSX2P35548 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC6.24□□□□□ -1.41
MSX2P35548 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 ZNF101P1-201ENST00000435701 1720 ntBASIC6.24□□□□□ -1.41
MSX2P35548 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX2P35548 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX2P35548 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 CCAT2-201ENST00000630920 1752 ntBASIC6.23□□□□□ -1.41
MSX2P35548 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.23□□□□□ -1.41
MSX2P35548 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.23□□□□□ -1.41
MSX2P35548 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 RNU6-207P-201ENST00000384137 107 ntBASIC6.23□□□□□ -1.41
MSX2P35548 RPS3AP5-201ENST00000389400 821 ntBASIC6.23□□□□□ -1.41
MSX2P35548 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
MSX2P35548 LSM5-206ENST00000409987 504 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 SNORA79B-201ENST00000410557 148 ntBASIC6.23□□□□□ -1.41
MSX2P35548 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.23□□□□□ -1.41
MSX2P35548 AL050320.1-201ENST00000420044 446 ntTSL 2 BASIC6.23□□□□□ -1.41
MSX2P35548 RPS7P12-201ENST00000422385 582 ntBASIC6.23□□□□□ -1.41
MSX2P35548 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.23□□□□□ -1.41
MSX2P35548 AF274573.1-201ENST00000430535 494 ntBASIC6.23□□□□□ -1.41
MSX2P35548 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC6.23□□□□□ -1.41
MSX2P35548 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX2P35548 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
MSX2P35548 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX2P35548 AC005517.1-201ENST00000452091 489 ntBASIC6.23□□□□□ -1.41
MSX2P35548 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX2P35548 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX2P35548 AL357143.1-201ENST00000457239 934 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 RN7SL216P-201ENST00000471607 298 ntBASIC6.23□□□□□ -1.41
MSX2P35548 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC6.23□□□□□ -1.41
MSX2P35548 RPS26P24-201ENST00000497656 331 ntBASIC6.23□□□□□ -1.41
MSX2P35548 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 SNX18P23-201ENST00000510867 677 ntBASIC6.23□□□□□ -1.41
MSX2P35548 AC016559.1-201ENST00000511420 199 ntBASIC6.23□□□□□ -1.41
MSX2P35548 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX2P35548 AP003119.2-201ENST00000528075 336 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX2P35548 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX2P35548 LYZ-203ENST00000549690 669 ntTSL 2 BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms