Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MIR146B-201ENST00000365699 73 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 RNU6-297P-201ENST00000384636 107 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 MIR559-201ENST00000385188 96 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 SNORD65C-201ENST00000390962 71 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 SLC2A11-205ENST00000403208 564 ntTSL 4 BASIC6.95□□□□□ -1.3
COL8A1P27658 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.95□□□□□ -1.3
COL8A1P27658 AL139805.1-201ENST00000407837 289 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 SNORA11B-201ENST00000408175 129 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 RNU2-39P-201ENST00000410604 198 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 RPL17P12-201ENST00000413391 526 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 RPS7P15-201ENST00000415804 584 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 POLR1B-204ENST00000417433 3836 ntTSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 PDCL2P1-201ENST00000419302 352 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AL359633.1-201ENST00000421403 310 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AL353193.1-201ENST00000421444 268 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 NPM1P18-201ENST00000434232 732 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AC105052.2-201ENST00000434317 794 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 CALM1P1-201ENST00000442082 433 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 CECR9-201ENST00000453421 199 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AL135908.1-202ENST00000454135 562 ntTSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC009955.1-201ENST00000455896 271 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 CEACAMP4-201ENST00000457676 421 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AC044810.1-201ENST00000480271 711 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 SNRPD2P1-201ENST00000489253 354 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 RPS15AP36-201ENST00000492022 382 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 NPM1P27-201ENST00000502784 830 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 CCL26-201ENST00000005180 526 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC011611.1-201ENST00000552179 197 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 SKA2-203ENST00000578105 689 ntTSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC100830.2-201ENST00000581636 240 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC011712.1-201ENST00000588959 234 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC068790.7-201ENST00000602347 528 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AC007363.1-201ENST00000604736 620 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC233702.2-201ENST00000618784 583 ntTSL 4 BASIC6.95□□□□□ -1.3
COL8A1P27658 AC002401.3-201ENST00000620020 440 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AC136475.10-201ENST00000620253 385 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 HCP5-201ENST00000414046 2658 ntTSL 4 BASIC6.95□□□□□ -1.3
COL8A1P27658 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 HMSD-201ENST00000408945 2101 ntAPPRIS P1 TSL 3 BASIC6.95□□□□□ -1.3
COL8A1P27658 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 CR383658.2-201ENST00000547576 1525 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 AL512353.3-201ENST00000417517 1326 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 NXF5-205ENST00000473265 1348 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 ZEB2-205ENST00000419938 1755 ntTSL 2 BASIC6.95□□□□□ -1.3
COL8A1P27658 SPP1-201ENST00000237623 1581 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 DNAH10-209ENST00000614082 3484 ntTSL 5 BASIC6.95□□□□□ -1.3
COL8A1P27658 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL8A1P27658 MTND4P35-201ENST00000604257 1375 ntBASIC6.95□□□□□ -1.3
COL8A1P27658 DPH3-204ENST00000488423 3131 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL8A1P27658 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL8A1P27658 TTC6-203ENST00000476979 2253 ntTSL 2 BASIC6.94□□□□□ -1.3
COL8A1P27658 YAP1-203ENST00000524575 1638 ntTSL 2 BASIC6.94□□□□□ -1.3
COL8A1P27658 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL8A1P27658 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC6.94□□□□□ -1.3
COL8A1P27658 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL8A1P27658 OPTN-202ENST00000378747 3400 ntAPPRIS P2 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL8A1P27658 AC006269.1-201ENST00000636752 2789 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
COL8A1P27658 HSPD1P7-201ENST00000447985 1686 ntBASIC6.94□□□□□ -1.3
COL8A1P27658 MAMDC2-AS1-204ENST00000448377 1923 ntTSL 5 BASIC6.94□□□□□ -1.3
COL8A1P27658 AL353588.1-201ENST00000505802 3513 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
COL8A1P27658 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC6.94□□□□□ -1.3
COL8A1P27658 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL8A1P27658 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC6.94□□□□□ -1.3
COL8A1P27658 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL8A1P27658 CTSL3P-201ENST00000354530 657 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL8A1P27658 RNU5F-7P-201ENST00000363696 115 ntBASIC6.94□□□□□ -1.3
COL8A1P27658 Y_RNA.166-201ENST00000363730 102 ntBASIC6.94□□□□□ -1.3
COL8A1P27658 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL8A1P27658 ESD-201ENST00000378697 1079 ntTSL 5 BASIC6.94□□□□□ -1.3
COL8A1P27658 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms