Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.76□□□□□ -1.49
COL6A3P12111 AC105399.1-202ENST00000447303 205 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 AC073358.1-201ENST00000505671 684 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC5.76□□□□□ -1.49
COL6A3P12111 AL161756.2-201ENST00000604597 246 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC5.76□□□□□ -1.49
COL6A3P12111 PTGS1-205ENST00000540753 5375 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 PRDM10-201ENST00000304538 5817 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 CASC19-255ENST00000641733 1385 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 AC008555.2-202ENST00000601776 5302 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 ZNF252P-201ENST00000426361 5210 ntTSL 4 BASIC5.76□□□□□ -1.49
COL6A3P12111 PTPRM-202ENST00000400053 5292 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
COL6A3P12111 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
COL6A3P12111 LINC01427-202ENST00000635258 4566 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A3P12111 OR2M1P-201ENST00000318104 951 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 SNORA71.3-201ENST00000362582 128 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 CYP4F32P-201ENST00000426492 504 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A3P12111 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A3P12111 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A3P12111 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A3P12111 ROBO2-202ENST00000461745 8946 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A3P12111 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A3P12111 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A3P12111 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A3P12111 LINC01588-202ENST00000528300 3208 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A3P12111 WDR31-201ENST00000341761 4862 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
COL6A3P12111 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.75□□□□□ -1.49
COL6A3P12111 AC032011.1-201ENST00000611703 1549 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 ZFYVE26-207ENST00000555452 7309 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 RNU4-39P-201ENST00000362455 127 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 RNU4ATAC2P-201ENST00000408674 126 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 MGAT2P1-201ENST00000449718 797 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 Z92846.1-201ENST00000456203 268 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
COL6A3P12111 RNA5SP400-201ENST00000517155 111 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 IGKV1-32-201ENST00000519290 311 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A3P12111 AC026367.2-201ENST00000610630 553 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC5.75□□□□□ -1.49
COL6A3P12111 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 EYA4-203ENST00000367895 5699 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 VIL1-201ENST00000248444 6531 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A3P12111 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
COL6A3P12111 GJA6P-201ENST00000415117 1042 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A3P12111 AC097484.1-201ENST00000471148 389 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.75□□□□□ -1.49
COL6A3P12111 OR4A6P-201ENST00000534364 970 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 FOXG1-AS1-203ENST00000551395 602 ntTSL 4 BASIC5.75□□□□□ -1.49
COL6A3P12111 MIR3158-1-201ENST00000583596 81 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 AC097717.1-225ENST00000600829 709 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A3P12111 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A3P12111 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A3P12111 AL121890.2-201ENST00000617644 465 ntBASIC5.75□□□□□ -1.49
COL6A3P12111 PFKM-232ENST00000629846 381 ntTSL 4 BASIC5.75□□□□□ -1.49
COL6A3P12111 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A3P12111 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A3P12111 GUCY1A2-203ENST00000526355 16205 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A3P12111 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A3P12111 AC105114.1-201ENST00000624795 1862 ntBASIC5.74□□□□□ -1.49
COL6A3P12111 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
COL6A3P12111 RN7SKP99-201ENST00000517028 307 ntBASIC5.74□□□□□ -1.49
COL6A3P12111 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.74□□□□□ -1.49
COL6A3P12111 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A3P12111 AC022146.1-201ENST00000595307 847 ntBASIC5.74□□□□□ -1.49
COL6A3P12111 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL6A3P12111 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 ZKSCAN1-205ENST00000535170 8758 ntTSL 2 BASIC5.74□□□□□ -1.49
COL6A3P12111 PPP1R3B-201ENST00000310455 5548 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 SEMA5A-201ENST00000382496 11762 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.74□□□□□ -1.49
COL6A3P12111 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.74□□□□□ -1.49
COL6A3P12111 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
COL6A3P12111 ZMYND8-217ENST00000536340 5273 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
COL6A3P12111 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 TRERF1-205ENST00000541110 7646 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 TACC2-229ENST00000515603 9101 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A3P12111 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms