Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 AC079315.1-201ENST00000602952 623 ntBASIC5.89□□□□□ -1.47
HLA-DQB2P05538 AL138895.2-201ENST00000603019 178 ntBASIC5.89□□□□□ -1.47
HLA-DQB2P05538 FAM27E4-201ENST00000605259 342 ntBASIC5.89□□□□□ -1.47
HLA-DQB2P05538 AC108865.2-201ENST00000606881 432 ntBASIC5.89□□□□□ -1.47
HLA-DQB2P05538 AL359742.1-201ENST00000622497 540 ntBASIC5.89□□□□□ -1.47
HLA-DQB2P05538 AC129915.3-201ENST00000634128 948 ntBASIC5.89□□□□□ -1.47
HLA-DQB2P05538 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.89□□□□□ -1.47
HLA-DQB2P05538 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
HLA-DQB2P05538 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC5.89□□□□□ -1.47
HLA-DQB2P05538 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HLA-DQB2P05538 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 AL669831.5-218ENST00000591702 1873 ntBASIC5.88□□□□□ -1.47
HLA-DQB2P05538 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 OR7E25P-201ENST00000344844 931 ntBASIC5.88□□□□□ -1.47
HLA-DQB2P05538 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 LYPLA1P3-201ENST00000402650 695 ntBASIC5.88□□□□□ -1.47
HLA-DQB2P05538 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.88□□□□□ -1.47
HLA-DQB2P05538 CDY8P-201ENST00000428380 1279 ntBASIC5.88□□□□□ -1.47
HLA-DQB2P05538 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 CDY20P-201ENST00000447528 1279 ntBASIC5.88□□□□□ -1.47
HLA-DQB2P05538 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 ACA64.1-201ENST00000459171 127 ntBASIC5.88□□□□□ -1.47
HLA-DQB2P05538 snoU13.29-201ENST00000459370 104 ntBASIC5.88□□□□□ -1.47
HLA-DQB2P05538 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 AL163952.1-202ENST00000569625 600 ntBASIC5.88□□□□□ -1.47
HLA-DQB2P05538 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.88□□□□□ -1.47
HLA-DQB2P05538 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
HLA-DQB2P05538 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 RPS21P8-201ENST00000413365 247 ntBASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AC019205.1-201ENST00000421830 730 ntBASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AL035660.1-201ENST00000422041 222 ntBASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AL512637.1-201ENST00000439523 1231 ntBASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 OR7E116P-201ENST00000448529 957 ntBASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AP000648.1-201ENST00000529682 397 ntBASIC5.87□□□□□ -1.47
HLA-DQB2P05538 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AC096996.1-201ENST00000563813 325 ntBASIC5.87□□□□□ -1.47
HLA-DQB2P05538 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 COX6CP7-201ENST00000597056 208 ntBASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AL031601.1-201ENST00000605702 394 ntBASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AC117409.1-201ENST00000470499 1310 ntBASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DQB2P05538 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HLA-DQB2P05538 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
HLA-DQB2P05538 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
HLA-DQB2P05538 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
HLA-DQB2P05538 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HLA-DQB2P05538 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.86□□□□□ -1.47
HLA-DQB2P05538 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HLA-DQB2P05538 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.86□□□□□ -1.47
HLA-DQB2P05538 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
HLA-DQB2P05538 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
HLA-DQB2P05538 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms