Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 SNORA11.3-201ENST00000408471 128 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC245060.4-201ENST00000413293 1121 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 RPS3AP38-201ENST00000435889 763 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC023141.8-201ENST00000442554 208 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC073109.1-201ENST00000445066 978 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC004129.2-201ENST00000457229 287 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC090424.1-201ENST00000535243 736 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 DPPA3P2-201ENST00000553589 478 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 FAM27E4-201ENST00000605259 342 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 SNORA11.6-201ENST00000619030 128 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AP001962.1-201ENST00000624114 559 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC022919.1-201ENST00000624979 626 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC139426.3-201ENST00000605648 2059 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 ZNF101P1-201ENST00000435701 1720 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 NEPNP-201ENST00000404786 1371 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 RNU1-59P-201ENST00000364829 162 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 TRAV35-201ENST00000390462 330 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 OR7E101P-201ENST00000400428 513 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 PSMA2P2-201ENST00000504319 686 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 AC090568.1-201ENST00000509499 856 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 EIF4EP5-201ENST00000528228 640 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 AC007346.2-201ENST00000564816 892 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 U1.25-201ENST00000614085 162 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 U1.34-201ENST00000618578 162 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 U1.31-201ENST00000620022 160 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 WDR95P-201ENST00000425638 1542 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 FBXL21-201ENST00000297158 1305 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.92□□□□□ -1.46
LHX3Q9UBR4 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
LHX3Q9UBR4 AL731532.1-201ENST00000623972 4236 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 OR2W4P-201ENST00000406496 926 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AK3P5-201ENST00000432033 519 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 DEFA9P-201ENST00000433042 285 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 GAPDHP48-201ENST00000436626 961 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC015983.1-201ENST00000441577 373 ntBASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.91□□□□□ -1.46
LHX3Q9UBR4 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms