Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 RACK1-235ENST00000626067 564 ntTSL 2 BASIC5.3□□□□□ -1.56
SSX3Q99909 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC5.3□□□□□ -1.56
SSX3Q99909 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SSX3Q99909 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SSX3Q99909 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC5.3□□□□□ -1.56
SSX3Q99909 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
SSX3Q99909 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SSX3Q99909 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SSX3Q99909 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC5.3□□□□□ -1.56
SSX3Q99909 AC093591.2-201ENST00000565254 3843 ntBASIC5.3□□□□□ -1.56
SSX3Q99909 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SSX3Q99909 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.3□□□□□ -1.56
SSX3Q99909 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SSX3Q99909 EEF1A1P9-201ENST00000514975 1383 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SSX3Q99909 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.29□□□□□ -1.56
SSX3Q99909 AC090181.3-201ENST00000624777 1514 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SSX3Q99909 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SSX3Q99909 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
SSX3Q99909 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SSX3Q99909 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
SSX3Q99909 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SSX3Q99909 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SSX3Q99909 PRELID1P1-201ENST00000403549 660 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AL359885.1-201ENST00000415786 903 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AL359092.1-201ENST00000417156 265 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AL360013.1-201ENST00000419031 858 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 RCC2P2-201ENST00000422174 918 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.29□□□□□ -1.56
SSX3Q99909 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SSX3Q99909 RPSAP32-201ENST00000432681 526 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.29□□□□□ -1.56
SSX3Q99909 AC007383.1-201ENST00000445875 636 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AL020997.1-201ENST00000446554 349 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC5.29□□□□□ -1.56
SSX3Q99909 MARK2P8-201ENST00000476069 952 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.29□□□□□ -1.56
SSX3Q99909 RPS27P20-201ENST00000492051 246 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC5.29□□□□□ -1.56
SSX3Q99909 IGHV1-14-201ENST00000523391 241 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 EIF4A2P5-201ENST00000529914 499 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 OR4A41P-201ENST00000533053 928 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC5.29□□□□□ -1.56
SSX3Q99909 RPL3P13-201ENST00000550415 216 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC5.29□□□□□ -1.56
SSX3Q99909 AC121758.1-202ENST00000556917 658 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.29□□□□□ -1.56
SSX3Q99909 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC5.29□□□□□ -1.56
SSX3Q99909 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.29□□□□□ -1.56
SSX3Q99909 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC5.29□□□□□ -1.56
SSX3Q99909 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC5.29□□□□□ -1.56
SSX3Q99909 WBP1LP12-201ENST00000604449 331 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AL135786.2-201ENST00000608422 615 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AC093388.1-201ENST00000609166 430 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AC117490.2-201ENST00000610042 594 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AC010998.3-201ENST00000613871 631 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC5.29□□□□□ -1.56
SSX3Q99909 AC073488.9-201ENST00000631601 754 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 AL596275.2-207ENST00000641188 675 ntBASIC5.29□□□□□ -1.56
SSX3Q99909 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.29□□□□□ -1.56
SSX3Q99909 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SSX3Q99909 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC5.29□□□□□ -1.56
SSX3Q99909 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SSX3Q99909 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SSX3Q99909 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC5.28□□□□□ -1.56
SSX3Q99909 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SSX3Q99909 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.28□□□□□ -1.56
SSX3Q99909 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC5.28□□□□□ -1.56
SSX3Q99909 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
SSX3Q99909 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SSX3Q99909 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SSX3Q99909 RNU1-84P-201ENST00000365447 164 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SSX3Q99909 YWHAZP4-201ENST00000392459 708 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 AL360271.1-201ENST00000395679 510 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 EI24P3-201ENST00000399046 1062 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 PSMA6P1-201ENST00000400275 741 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.28□□□□□ -1.56
SSX3Q99909 Z68868.1-201ENST00000429048 544 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.28□□□□□ -1.56
SSX3Q99909 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.28□□□□□ -1.56
SSX3Q99909 RPL5P10-201ENST00000445207 894 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.28□□□□□ -1.56
SSX3Q99909 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.28□□□□□ -1.56
SSX3Q99909 RN7SL39P-201ENST00000462264 297 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.28□□□□□ -1.56
SSX3Q99909 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC5.28□□□□□ -1.56
SSX3Q99909 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SSX3Q99909 RN7SL568P-201ENST00000493069 298 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.28□□□□□ -1.56
SSX3Q99909 AC093816.1-201ENST00000515076 913 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.28□□□□□ -1.56
SSX3Q99909 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SSX3Q99909 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.28□□□□□ -1.56
SSX3Q99909 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.28□□□□□ -1.56
SSX3Q99909 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SSX3Q99909 AC009852.2-201ENST00000567898 485 ntBASIC5.28□□□□□ -1.56
SSX3Q99909 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SSX3Q99909 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms