Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.59□□□□□ -1.51
LIM2P55344 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.59□□□□□ -1.51
LIM2P55344 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIM2P55344 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
LIM2P55344 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIM2P55344 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIM2P55344 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIM2P55344 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIM2P55344 AL355834.1-201ENST00000556602 3965 ntBASIC5.59□□□□□ -1.51
LIM2P55344 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
LIM2P55344 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
LIM2P55344 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.59□□□□□ -1.52
LIM2P55344 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
LIM2P55344 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.59□□□□□ -1.52
LIM2P55344 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
LIM2P55344 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.59□□□□□ -1.52
LIM2P55344 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.52
LIM2P55344 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
LIM2P55344 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.58□□□□□ -1.52
LIM2P55344 MSL3P1-202ENST00000440028 1468 ntBASIC5.58□□□□□ -1.52
LIM2P55344 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.58□□□□□ -1.52
LIM2P55344 AC027088.4-201ENST00000611559 1947 ntBASIC5.58□□□□□ -1.52
LIM2P55344 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.58□□□□□ -1.52
LIM2P55344 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
LIM2P55344 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 PARP4P2-201ENST00000446672 3326 ntBASIC5.58□□□□□ -1.52
LIM2P55344 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.58□□□□□ -1.52
LIM2P55344 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.58□□□□□ -1.52
LIM2P55344 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
LIM2P55344 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.58□□□□□ -1.52
LIM2P55344 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
LIM2P55344 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.58□□□□□ -1.52
LIM2P55344 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.58□□□□□ -1.52
LIM2P55344 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.58□□□□□ -1.52
LIM2P55344 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC5.58□□□□□ -1.52
LIM2P55344 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.58□□□□□ -1.52
LIM2P55344 RPL38P3-201ENST00000484463 213 ntBASIC5.58□□□□□ -1.52
LIM2P55344 PFN1P8-201ENST00000497012 543 ntBASIC5.58□□□□□ -1.52
LIM2P55344 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 Y_RNA.667-201ENST00000516212 107 ntBASIC5.58□□□□□ -1.52
LIM2P55344 RNA5SP438-201ENST00000516561 112 ntBASIC5.58□□□□□ -1.52
LIM2P55344 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.58□□□□□ -1.52
LIM2P55344 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.58□□□□□ -1.52
LIM2P55344 AC007346.2-201ENST00000564816 892 ntBASIC5.58□□□□□ -1.52
LIM2P55344 GARSP1-201ENST00000570895 719 ntBASIC5.58□□□□□ -1.52
LIM2P55344 TXNP4-201ENST00000575018 310 ntBASIC5.58□□□□□ -1.52
LIM2P55344 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.58□□□□□ -1.52
LIM2P55344 PCA3_2.1-201ENST00000612507 409 ntBASIC5.58□□□□□ -1.52
LIM2P55344 AC129778.1-202ENST00000623812 261 ntBASIC5.58□□□□□ -1.52
LIM2P55344 AL591379.1-207ENST00000635982 261 ntBASIC5.58□□□□□ -1.52
LIM2P55344 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.58□□□□□ -1.52
LIM2P55344 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.58□□□□□ -1.52
LIM2P55344 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
LIM2P55344 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.58□□□□□ -1.52
LIM2P55344 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.58□□□□□ -1.52
LIM2P55344 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.58□□□□□ -1.52
LIM2P55344 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 AC015799.1-201ENST00000622996 3122 ntBASIC5.58□□□□□ -1.52
LIM2P55344 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LIM2P55344 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.57□□□□□ -1.52
LIM2P55344 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIM2P55344 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.57□□□□□ -1.52
LIM2P55344 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.57□□□□□ -1.52
LIM2P55344 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
LIM2P55344 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.57□□□□□ -1.52
LIM2P55344 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LIM2P55344 MAPK10-270ENST00000641102 3538 ntBASIC5.57□□□□□ -1.52
LIM2P55344 TMSB4XP2-201ENST00000335179 210 ntBASIC5.57□□□□□ -1.52
LIM2P55344 SUGT1P2-201ENST00000379452 992 ntBASIC5.57□□□□□ -1.52
LIM2P55344 MIR621-201ENST00000384919 96 ntBASIC5.57□□□□□ -1.52
LIM2P55344 NPM1P36-201ENST00000415681 835 ntBASIC5.57□□□□□ -1.52
LIM2P55344 AC066692.1-201ENST00000421721 457 ntBASIC5.57□□□□□ -1.52
LIM2P55344 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.57□□□□□ -1.52
LIM2P55344 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.57□□□□□ -1.52
LIM2P55344 NDUFS5P5-201ENST00000437256 321 ntBASIC5.57□□□□□ -1.52
LIM2P55344 KRT8P51-201ENST00000438938 274 ntBASIC5.57□□□□□ -1.52
LIM2P55344 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LIM2P55344 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
LIM2P55344 AL359839.1-201ENST00000451975 1160 ntBASIC5.57□□□□□ -1.52
LIM2P55344 AL122020.1-201ENST00000472287 459 ntBASIC5.57□□□□□ -1.52
LIM2P55344 AC090058.1-201ENST00000498788 435 ntBASIC5.57□□□□□ -1.52
LIM2P55344 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LIM2P55344 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LIM2P55344 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.57□□□□□ -1.52
LIM2P55344 MIR2117-201ENST00000516780 80 ntBASIC5.57□□□□□ -1.52
LIM2P55344 IGKV2-19-201ENST00000518132 283 ntBASIC5.57□□□□□ -1.52
LIM2P55344 TRIM77BP-201ENST00000524985 1119 ntBASIC5.57□□□□□ -1.52
LIM2P55344 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms