Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LINC01739-205ENST00000641890 573 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SCN4AP35499 GTF2IP4-201ENST00000453092 2054 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.94□□□□□ -1.3
SCN4AP35499 AC092692.1-201ENST00000623625 2595 ntBASIC6.94□□□□□ -1.3
SCN4AP35499 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
SCN4AP35499 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SCN4AP35499 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SCN4AP35499 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
SCN4AP35499 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.93□□□□□ -1.3
SCN4AP35499 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SCN4AP35499 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
SCN4AP35499 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
SCN4AP35499 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
SCN4AP35499 AC096921.2-201ENST00000561507 1916 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SCN4AP35499 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SCN4AP35499 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
SCN4AP35499 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
SCN4AP35499 AL133325.1-201ENST00000421090 382 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 OR5W1P-201ENST00000423705 938 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 PRUNEP1-201ENST00000425846 705 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.93□□□□□ -1.3
SCN4AP35499 AC006335.2-201ENST00000437993 330 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 VDAC2P4-201ENST00000452925 711 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 GYG1P1-201ENST00000460864 698 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 AC093267.1-201ENST00000489176 961 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC6.93□□□□□ -1.3
SCN4AP35499 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC6.93□□□□□ -1.3
SCN4AP35499 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.93□□□□□ -1.3
SCN4AP35499 AP000662.1-201ENST00000530952 487 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 AL591848.4-201ENST00000567832 3472 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SCN4AP35499 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC6.93□□□□□ -1.3
SCN4AP35499 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
SCN4AP35499 AC137056.2-201ENST00000624055 1958 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
SCN4AP35499 WBP11P1-201ENST00000562560 1931 ntBASIC6.93□□□□□ -1.3
SCN4AP35499 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
SCN4AP35499 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
SCN4AP35499 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.92□□□□□ -1.3
SCN4AP35499 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 AL159987.1-201ENST00000347911 293 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 RNA5SP339-201ENST00000390987 122 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AL035419.1-201ENST00000397037 564 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AC016397.1-201ENST00000412463 242 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AL353626.3-201ENST00000413399 657 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 RPL26P29-201ENST00000415623 438 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 AL389915.2-201ENST00000454576 441 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.92□□□□□ -1.3
SCN4AP35499 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.92□□□□□ -1.3
SCN4AP35499 AC137768.1-201ENST00000549998 553 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC6.92□□□□□ -1.3
SCN4AP35499 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC6.92□□□□□ -1.3
SCN4AP35499 AL445647.2-201ENST00000615170 130 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AL118522.2-201ENST00000616045 615 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AC132068.1-201ENST00000623805 459 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AC022726.2-201ENST00000634673 547 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.92□□□□□ -1.3
SCN4AP35499 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC6.92□□□□□ -1.3
SCN4AP35499 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.92□□□□□ -1.3
SCN4AP35499 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
SCN4AP35499 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.3
SCN4AP35499 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 AC011369.2-201ENST00000624423 1567 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 RBMY2QP-201ENST00000429799 1147 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AL451136.1-201ENST00000435399 325 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AC083982.1-201ENST00000485679 344 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC6.92□□□□□ -1.3
SCN4AP35499 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC6.92□□□□□ -1.3
SCN4AP35499 AC018552.1-201ENST00000562099 811 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 GARSP1-201ENST00000570895 719 ntBASIC6.92□□□□□ -1.3
SCN4AP35499 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.92□□□□□ -1.3
SCN4AP35499 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
SCN4AP35499 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC6.92□□□□□ -1.3
SCN4AP35499 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
SCN4AP35499 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.91□□□□□ -1.3
SCN4AP35499 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
SCN4AP35499 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms