Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HOXA9P31269 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.24□□□□□ -1.41
HOXA9P31269 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXA9P31269 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.24□□□□□ -1.41
HOXA9P31269 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXA9P31269 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXA9P31269 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HOXA9P31269 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXA9P31269 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXA9P31269 RN7SKP160-201ENST00000363804 340 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
HOXA9P31269 RN7SKP166-201ENST00000410812 305 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 PTCD2P2-201ENST00000415579 1095 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.24□□□□□ -1.41
HOXA9P31269 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HOXA9P31269 MRPS21P3-201ENST00000436696 262 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 AC099521.1-201ENST00000482557 334 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 AC008638.1-201ENST00000506035 866 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC6.24□□□□□ -1.41
HOXA9P31269 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC6.24□□□□□ -1.41
HOXA9P31269 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXA9P31269 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC6.24□□□□□ -1.41
HOXA9P31269 MIR4505-201ENST00000582238 73 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.24□□□□□ -1.41
HOXA9P31269 OR7E18P-201ENST00000592589 702 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 FO393422.1-201ENST00000603908 708 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 AL139099.4-201ENST00000614802 114 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.24□□□□□ -1.41
HOXA9P31269 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.24□□□□□ -1.41
HOXA9P31269 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXA9P31269 PARP4P2-201ENST00000446672 3326 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXA9P31269 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXA9P31269 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXA9P31269 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXA9P31269 AC139426.3-201ENST00000605648 2059 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.24□□□□□ -1.41
HOXA9P31269 AC016583.1-201ENST00000624221 2431 ntBASIC6.24□□□□□ -1.41
HOXA9P31269 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.23□□□□□ -1.41
HOXA9P31269 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 AL391422.1-201ENST00000402155 436 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 HMGB1P20-201ENST00000402555 677 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 ZSCAN12P1-201ENST00000406489 419 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 MTND4LP17-201ENST00000414607 293 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.23□□□□□ -1.41
HOXA9P31269 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.23□□□□□ -1.41
HOXA9P31269 AC073909.1-201ENST00000447112 999 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.23□□□□□ -1.41
HOXA9P31269 AC103563.5-201ENST00000455643 364 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC6.23□□□□□ -1.41
HOXA9P31269 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC6.23□□□□□ -1.41
HOXA9P31269 RPL23AP40-201ENST00000487630 390 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 RPL17P2-201ENST00000491913 451 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 AC138866.2-201ENST00000508650 584 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.23□□□□□ -1.41
HOXA9P31269 DPPA3P2-202ENST00000557188 1219 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.23□□□□□ -1.41
HOXA9P31269 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 MIR4489-201ENST00000578869 62 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 AC145423.1-201ENST00000605712 336 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC6.23□□□□□ -1.41
HOXA9P31269 AC073365.1-203ENST00000641055 1992 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
HOXA9P31269 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
HOXA9P31269 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.23□□□□□ -1.41
HOXA9P31269 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 DOCK11P1-201ENST00000553480 5932 ntBASIC6.23□□□□□ -1.41
HOXA9P31269 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HOXA9P31269 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HOXA9P31269 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
HOXA9P31269 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.22□□□□□ -1.41
HOXA9P31269 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HOXA9P31269 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXA9P31269 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXA9P31269 MAPK10-261ENST00000641050 3109 ntBASIC6.22□□□□□ -1.41
HOXA9P31269 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXA9P31269 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXA9P31269 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXA9P31269 RNA5SP394-201ENST00000364216 119 ntBASIC6.22□□□□□ -1.41
HOXA9P31269 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXA9P31269 AC099677.3-201ENST00000427081 395 ntBASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms