Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC009117.3-201ENST00000568136 543 ntTSL 4 BASIC7.33□□□□□ -1.24
MSX1P28360 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC7.33□□□□□ -1.24
MSX1P28360 AC020914.6-201ENST00000594327 272 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC7.33□□□□□ -1.24
MSX1P28360 AC006547.1-211ENST00000609191 828 ntTSL 5 BASIC7.33□□□□□ -1.24
MSX1P28360 7SK.12-201ENST00000612820 244 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC136475.10-201ENST00000620253 385 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AP000648.2-201ENST00000624182 404 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC011815.3-201ENST00000624194 473 ntBASIC7.33□□□□□ -1.24
MSX1P28360 AC024023.1-201ENST00000624530 922 ntBASIC7.33□□□□□ -1.24
MSX1P28360 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC7.33□□□□□ -1.24
MSX1P28360 DIAPH3-201ENST00000267215 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 LINC01060-204ENST00000510832 2435 ntTSL 2 BASIC7.33□□□□□ -1.24
MSX1P28360 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC7.33□□□□□ -1.24
MSX1P28360 PDIK1L-201ENST00000374269 2566 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
MSX1P28360 RHOXF1-AS1-201ENST00000553843 2102 ntTSL 2 BASIC7.33□□□□□ -1.24
MSX1P28360 MTCO1P6-201ENST00000481192 1384 ntBASIC7.33□□□□□ -1.24
MSX1P28360 C14orf37-201ENST00000267485 6495 ntAPPRIS P2 TSL 1 (best) BASIC7.33□□□□□ -1.24
MSX1P28360 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 OR9M1P-202ENST00000641564 3163 ntBASIC7.32□□□□□ -1.24
MSX1P28360 AC130464.1-201ENST00000416201 1500 ntBASIC7.32□□□□□ -1.24
MSX1P28360 LYARP1-201ENST00000436977 1501 ntBASIC7.32□□□□□ -1.24
MSX1P28360 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 AL136146.1-201ENST00000529830 1667 ntBASIC7.32□□□□□ -1.24
MSX1P28360 NAA11-201ENST00000286794 2014 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC7.32□□□□□ -1.24
MSX1P28360 AL590999.1-201ENST00000607675 3776 ntTSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 CLK1-215ENST00000621181 1843 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 HSD11B1-203ENST00000367028 1461 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
MSX1P28360 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 TNPO3-202ENST00000471166 3019 ntTSL 5 BASIC7.32□□□□□ -1.24
MSX1P28360 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
MSX1P28360 SMG1P1-202ENST00000309865 4223 ntBASIC7.32□□□□□ -1.24
MSX1P28360 OR13H1-201ENST00000338616 927 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
MSX1P28360 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 SNORA30-201ENST00000384028 129 ntBASIC7.32□□□□□ -1.24
MSX1P28360 TRBV5-3-201ENST00000390362 343 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
MSX1P28360 OR7E101P-201ENST00000400428 513 ntBASIC7.32□□□□□ -1.24
MSX1P28360 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC7.32□□□□□ -1.24
MSX1P28360 AC074117.1-203ENST00000412749 399 ntTSL 3 BASIC7.32□□□□□ -1.24
MSX1P28360 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 OFD1P12Y-201ENST00000427963 1207 ntBASIC7.32□□□□□ -1.24
MSX1P28360 AC002069.1-201ENST00000429649 1159 ntBASIC7.32□□□□□ -1.24
MSX1P28360 PRPS1P2-201ENST00000430496 937 ntBASIC7.32□□□□□ -1.24
MSX1P28360 AL645936.2-201ENST00000430565 928 ntBASIC7.32□□□□□ -1.24
MSX1P28360 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC7.32□□□□□ -1.24
MSX1P28360 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
MSX1P28360 SEPT7P5-201ENST00000434048 306 ntBASIC7.32□□□□□ -1.24
MSX1P28360 RPS21P1-201ENST00000434479 247 ntBASIC7.32□□□□□ -1.24
MSX1P28360 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC7.32□□□□□ -1.24
MSX1P28360 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 AL157714.2-204ENST00000452283 973 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 AC092757.1-201ENST00000467293 467 ntBASIC7.32□□□□□ -1.24
MSX1P28360 AF305872.1-201ENST00000485217 471 ntBASIC7.32□□□□□ -1.24
MSX1P28360 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC7.32□□□□□ -1.24
MSX1P28360 NMNAT1P4-201ENST00000505598 840 ntBASIC7.32□□□□□ -1.24
MSX1P28360 FGF7P4-201ENST00000509595 295 ntBASIC7.32□□□□□ -1.24
MSX1P28360 MTND1P35-201ENST00000526739 508 ntBASIC7.32□□□□□ -1.24
MSX1P28360 AP002748.2-201ENST00000528671 348 ntBASIC7.32□□□□□ -1.24
MSX1P28360 AP001257.1-201ENST00000533106 385 ntTSL 3 BASIC7.32□□□□□ -1.24
MSX1P28360 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC7.32□□□□□ -1.24
MSX1P28360 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 LINC00906-202ENST00000587998 648 ntTSL 3 BASIC7.32□□□□□ -1.24
MSX1P28360 DTNA-220ENST00000590831 847 ntTSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 AC093503.1-202ENST00000598743 478 ntTSL 5 BASIC7.32□□□□□ -1.24
MSX1P28360 AC107214.2-201ENST00000608204 634 ntBASIC7.32□□□□□ -1.24
MSX1P28360 AC103710.1-201ENST00000610003 901 ntBASIC7.32□□□□□ -1.24
MSX1P28360 Metazoa_SRP.124-201ENST00000610352 345 ntBASIC7.32□□□□□ -1.24
MSX1P28360 TUG1_3.1-201ENST00000616187 237 ntBASIC7.32□□□□□ -1.24
MSX1P28360 AC106875.2-201ENST00000617634 596 ntTSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC7.32□□□□□ -1.24
MSX1P28360 PPP3R2-202ENST00000636434 1081 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 SAMMSON-227ENST00000642114 1199 ntBASIC7.32□□□□□ -1.24
MSX1P28360 CFAP47-201ENST00000297866 3608 ntTSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 ZNF670-ZNF695-202ENST00000474541 2751 ntAPPRIS ALT2 TSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 AC108099.1-201ENST00000564402 3258 ntBASIC7.32□□□□□ -1.24
MSX1P28360 TNFRSF19-204ENST00000403372 4277 ntAPPRIS ALT2 TSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 AC138409.1-201ENST00000505001 3598 ntBASIC7.32□□□□□ -1.24
MSX1P28360 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 EIF4ENIF1-201ENST00000330125 3544 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 LPAR6-202ENST00000378434 3004 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 GPX5-201ENST00000412168 1540 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC7.32□□□□□ -1.24
MSX1P28360 CASK-204ENST00000378166 3123 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 DNAH9-215ENST00000608377 3147 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC7.32□□□□□ -1.24
MSX1P28360 UGT2B28-201ENST00000335568 1833 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms