Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RNU1-49P-201ENST00000363468 159 ntBASIC6.61□□□□□ -1.35
BDNFP23560 RNU1-146P-201ENST00000364015 165 ntBASIC6.61□□□□□ -1.35
BDNFP23560 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
BDNFP23560 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
BDNFP23560 RPL5P19-201ENST00000404228 893 ntBASIC6.61□□□□□ -1.35
BDNFP23560 RNU6-564P-201ENST00000410983 104 ntBASIC6.61□□□□□ -1.35
BDNFP23560 MTND4LP17-201ENST00000414607 293 ntBASIC6.61□□□□□ -1.35
BDNFP23560 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.61□□□□□ -1.35
BDNFP23560 UBE2V1P14-201ENST00000415815 558 ntBASIC6.61□□□□□ -1.35
BDNFP23560 SETP10-201ENST00000424368 814 ntBASIC6.61□□□□□ -1.35
BDNFP23560 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.61□□□□□ -1.35
BDNFP23560 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.61□□□□□ -1.35
BDNFP23560 AC069154.1-201ENST00000432914 542 ntBASIC6.61□□□□□ -1.35
BDNFP23560 AC110602.1-201ENST00000437414 318 ntBASIC6.61□□□□□ -1.35
BDNFP23560 PPIAP10-201ENST00000438675 458 ntBASIC6.61□□□□□ -1.35
BDNFP23560 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC6.61□□□□□ -1.35
BDNFP23560 Z83838.1-202ENST00000456225 839 ntBASIC6.61□□□□□ -1.35
BDNFP23560 RANP2-201ENST00000456833 229 ntBASIC6.61□□□□□ -1.35
BDNFP23560 MTND3P6-201ENST00000485242 339 ntBASIC6.61□□□□□ -1.35
BDNFP23560 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC6.61□□□□□ -1.35
BDNFP23560 RNU6-551P-201ENST00000516661 103 ntBASIC6.61□□□□□ -1.35
BDNFP23560 Y_RNA.710-201ENST00000516975 110 ntBASIC6.61□□□□□ -1.35
BDNFP23560 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC6.61□□□□□ -1.35
BDNFP23560 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.61□□□□□ -1.35
BDNFP23560 OR4V1P-201ENST00000525394 1140 ntBASIC6.61□□□□□ -1.35
BDNFP23560 AP001858.2-201ENST00000536213 601 ntBASIC6.61□□□□□ -1.35
BDNFP23560 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.61□□□□□ -1.35
BDNFP23560 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.61□□□□□ -1.35
BDNFP23560 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.61□□□□□ -1.35
BDNFP23560 AC090888.3-201ENST00000558917 509 ntBASIC6.61□□□□□ -1.35
BDNFP23560 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.61□□□□□ -1.35
BDNFP23560 AC005726.4-201ENST00000582858 458 ntBASIC6.61□□□□□ -1.35
BDNFP23560 AC022387.2-201ENST00000604050 448 ntBASIC6.61□□□□□ -1.35
BDNFP23560 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC6.61□□□□□ -1.35
BDNFP23560 AL591167.1-201ENST00000607321 456 ntBASIC6.61□□□□□ -1.35
BDNFP23560 OR51C1P-201ENST00000608504 942 ntBASIC6.61□□□□□ -1.35
BDNFP23560 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.61□□□□□ -1.35
BDNFP23560 RN7SL261P-201ENST00000613441 282 ntBASIC6.61□□□□□ -1.35
BDNFP23560 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.61□□□□□ -1.35
BDNFP23560 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.61□□□□□ -1.35
BDNFP23560 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
BDNFP23560 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.61□□□□□ -1.35
BDNFP23560 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
BDNFP23560 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
BDNFP23560 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
BDNFP23560 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
BDNFP23560 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
BDNFP23560 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.61□□□□□ -1.35
BDNFP23560 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
BDNFP23560 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.61□□□□□ -1.35
BDNFP23560 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.61□□□□□ -1.35
BDNFP23560 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
BDNFP23560 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
BDNFP23560 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
BDNFP23560 AL731556.1-201ENST00000394628 3711 ntBASIC6.6□□□□□ -1.35
BDNFP23560 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
BDNFP23560 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.6□□□□□ -1.35
BDNFP23560 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
BDNFP23560 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
BDNFP23560 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
BDNFP23560 RNA5SP433-201ENST00000364491 114 ntBASIC6.6□□□□□ -1.35
BDNFP23560 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC6.6□□□□□ -1.35
BDNFP23560 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
BDNFP23560 AL445238.1-204ENST00000400311 463 ntBASIC6.6□□□□□ -1.35
BDNFP23560 AL136131.1-201ENST00000406079 803 ntBASIC6.6□□□□□ -1.35
BDNFP23560 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC6.6□□□□□ -1.35
BDNFP23560 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC6.6□□□□□ -1.35
BDNFP23560 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC6.6□□□□□ -1.35
BDNFP23560 PNKDP1-201ENST00000435914 430 ntBASIC6.6□□□□□ -1.35
BDNFP23560 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
BDNFP23560 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC6.6□□□□□ -1.35
BDNFP23560 XKRYP6-201ENST00000440468 1116 ntBASIC6.6□□□□□ -1.35
BDNFP23560 XKRYP3-201ENST00000442113 1116 ntBASIC6.6□□□□□ -1.35
BDNFP23560 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC6.6□□□□□ -1.35
BDNFP23560 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.6□□□□□ -1.35
BDNFP23560 PFN1P8-201ENST00000497012 543 ntBASIC6.6□□□□□ -1.35
BDNFP23560 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.6□□□□□ -1.35
BDNFP23560 AC011411.1-201ENST00000509592 876 ntBASIC6.6□□□□□ -1.35
BDNFP23560 RPS27AP18-201ENST00000515536 459 ntBASIC6.6□□□□□ -1.35
BDNFP23560 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC6.6□□□□□ -1.35
BDNFP23560 IGHV1-14-201ENST00000523391 241 ntBASIC6.6□□□□□ -1.35
BDNFP23560 AC090115.2-201ENST00000548060 883 ntBASIC6.6□□□□□ -1.35
BDNFP23560 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
BDNFP23560 AC007346.1-201ENST00000569208 867 ntBASIC6.6□□□□□ -1.35
BDNFP23560 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.6□□□□□ -1.35
BDNFP23560 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
BDNFP23560 AP001823.1-201ENST00000604056 1003 ntBASIC6.6□□□□□ -1.35
BDNFP23560 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.6□□□□□ -1.35
BDNFP23560 AC092681.3-201ENST00000609463 678 ntBASIC6.6□□□□□ -1.35
BDNFP23560 Z95327.3-201ENST00000610385 572 ntBASIC6.6□□□□□ -1.35
BDNFP23560 RFPL4AP6-201ENST00000616792 846 ntBASIC6.6□□□□□ -1.35
BDNFP23560 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC6.6□□□□□ -1.35
BDNFP23560 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6.6□□□□□ -1.35
BDNFP23560 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC6.6□□□□□ -1.35
BDNFP23560 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.6□□□□□ -1.35
BDNFP23560 UGT2B26P-201ENST00000508672 1613 ntBASIC6.6□□□□□ -1.35
BDNFP23560 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
BDNFP23560 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
BDNFP23560 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
BDNFP23560 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms