Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MIR670-201ENST00000390142 98 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 RNU4-25P-201ENST00000410569 230 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A3P12111 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.77□□□□□ -1.49
COL6A3P12111 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A3P12111 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A3P12111 AC106785.1-201ENST00000565935 262 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 ZAN-205ENST00000613979 8669 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 AC107884.1-207ENST00000504206 4433 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A3P12111 SVIL-201ENST00000355867 7586 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 AC022819.1-201ENST00000563495 3910 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 CELF2-204ENST00000417956 8044 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 SEMA6D-203ENST00000355997 5908 ntTSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 SEMA6D-204ENST00000358066 5913 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 JAKMIP2-206ENST00000616793 9272 ntAPPRIS ALT1 TSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 ATF7-201ENST00000420353 6680 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 MGAT4A-202ENST00000393487 8382 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 AC096921.2-201ENST00000561507 1916 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 AC023824.7-201ENST00000623041 5731 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 KIAA0368-202ENST00000338205 7078 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 RN7SKP224-201ENST00000364140 325 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 RNA5SP478-201ENST00000364657 115 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 IGBP1P3-201ENST00000447449 1000 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.77□□□□□ -1.49
COL6A3P12111 MIR4691-201ENST00000583764 85 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 ANKRD17-202ENST00000358602 10784 ntAPPRIS P4 TSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 CILP-201ENST00000261883 5695 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 DOCK8-201ENST00000382329 6124 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
COL6A3P12111 TDRD3-209ENST00000621840 2497 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.77□□□□□ -1.49
COL6A3P12111 PCDHA10-203ENST00000562220 12358 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 TCF20-202ENST00000359486 7410 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 ROBO1-204ENST00000467549 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 PDE4DIP-219ENST00000524974 8305 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 RNU11-6P-201ENST00000391127 133 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 RPL36AP36-201ENST00000418616 301 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 RHOT1P3-201ENST00000436571 331 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 AC015983.1-201ENST00000441577 373 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 RPS27AP3-201ENST00000453803 454 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.77□□□□□ -1.49
COL6A3P12111 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 AC018816.2-201ENST00000621460 353 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 SIPA1L1-211ENST00000555818 7831 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 GOLGA8CP-201ENST00000446144 5237 ntBASIC5.77□□□□□ -1.49
COL6A3P12111 AGAP1-207ENST00000428334 10090 ntTSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 RELN-201ENST00000343529 11565 ntAPPRIS P3 TSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 RELN-202ENST00000424685 11571 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 RELN-203ENST00000428762 11571 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL6A3P12111 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL6A3P12111 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 PPIP5K1-206ENST00000381885 5596 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
COL6A3P12111 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 FKBP14-201ENST00000222803 4960 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 BCL2L13-203ENST00000355028 4458 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 RPL31-204ENST00000409038 817 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 CEACAMP8-201ENST00000413902 580 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 AC091390.3-201ENST00000426478 338 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 AC007559.1-201ENST00000428736 355 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 RBMY2TP-201ENST00000451162 947 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 AC008481.1-201ENST00000463278 396 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 AC090589.1-201ENST00000473109 362 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 AC007224.1-201ENST00000564410 144 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
COL6A3P12111 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
COL6A3P12111 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 TACR1-201ENST00000305249 4959 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 PPIP5K1-203ENST00000360135 5559 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
COL6A3P12111 PPIP5K1-204ENST00000360301 5565 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
COL6A3P12111 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL6A3P12111 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.76□□□□□ -1.49
COL6A3P12111 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC5.76□□□□□ -1.49
COL6A3P12111 RBPJP2-201ENST00000618187 1444 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
COL6A3P12111 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.76□□□□□ -1.49
COL6A3P12111 HSPD1P12-201ENST00000429127 1069 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms