Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 AL158211.5-201ENST00000623583 2518 ntBASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATG4BQ9Y4P1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 AP003097.1-201ENST00000530657 1135 ntBASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATG4BQ9Y4P1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.64■□□□□ 0.58
ATG4BQ9Y4P1 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
ATG4BQ9Y4P1 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
ATG4BQ9Y4P1 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
ATG4BQ9Y4P1 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
ATG4BQ9Y4P1 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 POM121L13P-201ENST00000422362 380 ntBASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATG4BQ9Y4P1 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
ATG4BQ9Y4P1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms