Protein–RNA interactions for Protein: Q9P0J7

KCMF1, E3 ubiquitin-protein ligase KCMF1, humanhuman

Predictions only

Length 381 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCMF1Q9P0J7 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
KCMF1Q9P0J7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
KCMF1Q9P0J7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
KCMF1Q9P0J7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
KCMF1Q9P0J7 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KCMF1Q9P0J7 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KCMF1Q9P0J7 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
KCMF1Q9P0J7 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
KCMF1Q9P0J7 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
KCMF1Q9P0J7 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 ITM2C-210ENST00000620962 501 ntBASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 AC007952.6-201ENST00000573168 2673 ntBASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 AC003957.1-201ENST00000625108 2673 ntBASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.67■□□□□ 0.58
KCMF1Q9P0J7 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 KRT17P3-201ENST00000420566 1262 ntBASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 AC233263.1-201ENST00000578059 224 ntBASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
KCMF1Q9P0J7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 AC125437.2-201ENST00000625180 2167 ntBASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 AC006058.3-201ENST00000606217 1069 ntBASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 AL121906.2-201ENST00000621597 723 ntBASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.65■□□□□ 0.58
KCMF1Q9P0J7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
KCMF1Q9P0J7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
KCMF1Q9P0J7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.64■□□□□ 0.58
KCMF1Q9P0J7 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
KCMF1Q9P0J7 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
KCMF1Q9P0J7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
KCMF1Q9P0J7 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
KCMF1Q9P0J7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
KCMF1Q9P0J7 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
KCMF1Q9P0J7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
KCMF1Q9P0J7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
KCMF1Q9P0J7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.64■□□□□ 0.57
KCMF1Q9P0J7 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms