Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP42Q9H9J4 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USP42Q9H9J4 INGX-201ENST00000359239 846 ntBASIC25.12■■□□□ 1.61
USP42Q9H9J4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
USP42Q9H9J4 AC022616.7-201ENST00000525383 220 ntBASIC25.12■■□□□ 1.61
USP42Q9H9J4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC25.12■■□□□ 1.61
USP42Q9H9J4 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC25.11■■□□□ 1.61
USP42Q9H9J4 KRT8P17-201ENST00000453110 1448 ntBASIC25.11■■□□□ 1.61
USP42Q9H9J4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
USP42Q9H9J4 BID-203ENST00000399765 1879 ntTSL 2 BASIC25.11■■□□□ 1.61
USP42Q9H9J4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
USP42Q9H9J4 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
USP42Q9H9J4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
USP42Q9H9J4 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
USP42Q9H9J4 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
USP42Q9H9J4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
USP42Q9H9J4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC25.11■■□□□ 1.61
USP42Q9H9J4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC25.11■■□□□ 1.61
USP42Q9H9J4 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USP42Q9H9J4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
USP42Q9H9J4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC25.1■■□□□ 1.61
USP42Q9H9J4 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USP42Q9H9J4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
USP42Q9H9J4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USP42Q9H9J4 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC25.1■■□□□ 1.61
USP42Q9H9J4 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
USP42Q9H9J4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC25.1■■□□□ 1.61
USP42Q9H9J4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
USP42Q9H9J4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC25.1■■□□□ 1.61
USP42Q9H9J4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC25.1■■□□□ 1.61
USP42Q9H9J4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USP42Q9H9J4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP42Q9H9J4 ME2-216ENST00000639850 2331 ntTSL 5 BASIC25.09■■□□□ 1.61
USP42Q9H9J4 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP42Q9H9J4 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
USP42Q9H9J4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
USP42Q9H9J4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC25.09■■□□□ 1.61
USP42Q9H9J4 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP42Q9H9J4 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC25.09■■□□□ 1.61
USP42Q9H9J4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
USP42Q9H9J4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP42Q9H9J4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP42Q9H9J4 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
USP42Q9H9J4 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC25.09■■□□□ 1.61
USP42Q9H9J4 AC063952.2-201ENST00000498792 1227 ntBASIC25.09■■□□□ 1.61
USP42Q9H9J4 AC097488.1-201ENST00000507834 756 ntBASIC25.09■■□□□ 1.61
USP42Q9H9J4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC25.09■■□□□ 1.61
USP42Q9H9J4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC25.09■■□□□ 1.61
USP42Q9H9J4 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP42Q9H9J4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USP42Q9H9J4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USP42Q9H9J4 STK25-204ENST00000405585 1643 ntTSL 2 BASIC25.08■■□□□ 1.61
USP42Q9H9J4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USP42Q9H9J4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
USP42Q9H9J4 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USP42Q9H9J4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USP42Q9H9J4 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
USP42Q9H9J4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.6
USP42Q9H9J4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC25.08■■□□□ 1.6
USP42Q9H9J4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.6
USP42Q9H9J4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
USP42Q9H9J4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC25.08■■□□□ 1.6
USP42Q9H9J4 AK4P3-201ENST00000418260 669 ntBASIC25.08■■□□□ 1.6
USP42Q9H9J4 CRYGFP-201ENST00000418459 633 ntBASIC25.08■■□□□ 1.6
USP42Q9H9J4 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC25.08■■□□□ 1.6
USP42Q9H9J4 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
USP42Q9H9J4 MYC-208ENST00000641036 567 ntBASIC25.08■■□□□ 1.6
USP42Q9H9J4 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
USP42Q9H9J4 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
USP42Q9H9J4 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC25.07■■□□□ 1.6
USP42Q9H9J4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
USP42Q9H9J4 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
USP42Q9H9J4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
USP42Q9H9J4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
USP42Q9H9J4 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
USP42Q9H9J4 AL121603.2-201ENST00000557373 2117 ntBASIC25.07■■□□□ 1.6
USP42Q9H9J4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP42Q9H9J4 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC25.07■■□□□ 1.6
USP42Q9H9J4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP42Q9H9J4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP42Q9H9J4 BX664615.1-201ENST00000443558 458 ntBASIC25.07■■□□□ 1.6
USP42Q9H9J4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC25.07■■□□□ 1.6
USP42Q9H9J4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC25.07■■□□□ 1.6
USP42Q9H9J4 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP42Q9H9J4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP42Q9H9J4 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
USP42Q9H9J4 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
USP42Q9H9J4 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC25.06■■□□□ 1.6
USP42Q9H9J4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC25.06■■□□□ 1.6
USP42Q9H9J4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
USP42Q9H9J4 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USP42Q9H9J4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC25.06■■□□□ 1.6
USP42Q9H9J4 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
USP42Q9H9J4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms