Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
CCDC113Q9H0I3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CCDC113Q9H0I3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 KRT16P6-202ENST00000425692 1426 ntBASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC113Q9H0I3 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 LINC01521-201ENST00000504184 1943 ntBASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 KRASP1-201ENST00000407852 552 ntBASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC113Q9H0I3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 UBE2SP1-201ENST00000450587 669 ntBASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 FAM197Y4-202ENST00000622692 608 ntBASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CCDC113Q9H0I3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 AC116351.2-201ENST00000606540 1585 ntBASIC21.78■■□□□ 1.08
CCDC113Q9H0I3 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 AC093827.2-201ENST00000512654 315 ntBASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 PRKY-204ENST00000533551 1019 ntBASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms