Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS35Q96QK1 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS35Q96QK1 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS35Q96QK1 AC009237.14-201ENST00000609975 1594 ntBASIC19.57■□□□□ 0.72
VPS35Q96QK1 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 AC239809.2-201ENST00000415381 517 ntBASIC19.57■□□□□ 0.72
VPS35Q96QK1 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 AC098590.1-201ENST00000468126 897 ntBASIC19.57■□□□□ 0.72
VPS35Q96QK1 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
VPS35Q96QK1 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS35Q96QK1 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
VPS35Q96QK1 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
VPS35Q96QK1 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS35Q96QK1 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS35Q96QK1 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS35Q96QK1 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS35Q96QK1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS35Q96QK1 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS35Q96QK1 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS35Q96QK1 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS35Q96QK1 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.56■□□□□ 0.72
VPS35Q96QK1 RPPH1-201ENST00000516869 333 ntBASIC19.56■□□□□ 0.72
VPS35Q96QK1 C1QBPP2-201ENST00000528754 825 ntBASIC19.56■□□□□ 0.72
VPS35Q96QK1 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.56■□□□□ 0.72
VPS35Q96QK1 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VPS35Q96QK1 AC124016.1-201ENST00000609552 612 ntBASIC19.56■□□□□ 0.72
VPS35Q96QK1 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.56■□□□□ 0.72
VPS35Q96QK1 AL023875.1-201ENST00000640777 796 ntBASIC19.56■□□□□ 0.72
VPS35Q96QK1 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS35Q96QK1 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS35Q96QK1 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS35Q96QK1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS35Q96QK1 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS35Q96QK1 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS35Q96QK1 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS35Q96QK1 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS35Q96QK1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS35Q96QK1 GCSHP5-201ENST00000443090 522 ntBASIC19.55■□□□□ 0.72
VPS35Q96QK1 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 AL359736.2-201ENST00000621992 437 ntBASIC19.55■□□□□ 0.72
VPS35Q96QK1 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS35Q96QK1 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
VPS35Q96QK1 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS35Q96QK1 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS35Q96QK1 AP006587.1-201ENST00000534129 1502 ntBASIC19.54■□□□□ 0.72
VPS35Q96QK1 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS35Q96QK1 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms