Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS39Q96JC1 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS39Q96JC1 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS39Q96JC1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS39Q96JC1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
VPS39Q96JC1 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
VPS39Q96JC1 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS39Q96JC1 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS39Q96JC1 AC023632.3-201ENST00000521633 145 ntBASIC19.74■□□□□ 0.75
VPS39Q96JC1 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS39Q96JC1 AC005181.1-201ENST00000604782 1256 ntBASIC19.74■□□□□ 0.75
VPS39Q96JC1 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS39Q96JC1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS39Q96JC1 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS39Q96JC1 AC018445.3-201ENST00000624177 1945 ntBASIC19.74■□□□□ 0.75
VPS39Q96JC1 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS39Q96JC1 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS39Q96JC1 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 PHGDH-210ENST00000641115 1638 ntBASIC19.73■□□□□ 0.75
VPS39Q96JC1 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 AC004911.1-201ENST00000416316 871 ntBASIC19.73■□□□□ 0.75
VPS39Q96JC1 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 HCG11-201ENST00000411553 5696 ntBASIC19.73■□□□□ 0.75
VPS39Q96JC1 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
VPS39Q96JC1 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS39Q96JC1 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS39Q96JC1 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
VPS39Q96JC1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS39Q96JC1 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS39Q96JC1 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS39Q96JC1 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS39Q96JC1 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS39Q96JC1 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS39Q96JC1 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
VPS39Q96JC1 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS39Q96JC1 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VPS39Q96JC1 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 BX323043.1-201ENST00000641006 1765 ntBASIC19.7■□□□□ 0.74
VPS39Q96JC1 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
VPS39Q96JC1 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS39Q96JC1 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms