Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 AC007225.1-201ENST00000566331 1836 ntBASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 SNORA78-201ENST00000459373 127 ntBASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 AL121906.2-201ENST00000621597 723 ntBASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.97■□□□□ 0.63
CLIP3Q96DZ5 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 AL031963.3-201ENST00000606441 850 ntBASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.96■□□□□ 0.63
CLIP3Q96DZ5 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 AL135905.2-201ENST00000584934 1404 ntBASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 RPS2P55-201ENST00000397318 883 ntBASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 AC107956.1-201ENST00000494359 873 ntBASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 AP001412.1-201ENST00000608405 714 ntBASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CLIP3Q96DZ5 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLIP3Q96DZ5 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms